Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33110

Experiment: 36hr PHYTO10 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS33110 and BPHYT_RS33115 are separated by 254 nucleotides BPHYT_RS33110: BPHYT_RS33110 - chloroperoxidase, at 3,004,677 to 3,005,663 _RS33110 BPHYT_RS33115: BPHYT_RS33115 - small mechanosensitive ion channel protein MscS, at 3,005,918 to 3,007,375 _RS33115 Position (kb) 3004 3005 3006Strain fitness (log2 ratio) -1 0 1at 3003.750 kb on - strandat 3004.058 kb on + strandat 3004.588 kb on + strandat 3004.822 kb on - strand, within BPHYT_RS33110at 3005.008 kb on + strand, within BPHYT_RS33110at 3005.791 kb on - strandat 3006.403 kb on + strand, within BPHYT_RS33115at 3006.507 kb on + strand, within BPHYT_RS33115at 3006.582 kb on - strand, within BPHYT_RS33115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 10
remove
3,003,750 - -1.4
3,004,058 + +0.2
3,004,588 + +0.3
3,004,822 - BPHYT_RS33110 0.15 +0.2
3,005,008 + BPHYT_RS33110 0.34 -1.5
3,005,791 - -1.1
3,006,403 + BPHYT_RS33115 0.33 -0.2
3,006,507 + BPHYT_RS33115 0.40 +0.6
3,006,582 - BPHYT_RS33115 0.46 -0.4

Or see this region's nucleotide sequence