Experiment: 36hr PHYTO10 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24565 and BPHYT_RS24570 are separated by 547 nucleotides BPHYT_RS24570 and BPHYT_RS24575 are separated by 17 nucleotides BPHYT_RS24575 and BPHYT_RS24580 are separated by 3 nucleotides BPHYT_RS24580 and BPHYT_RS24585 are separated by 222 nucleotides
BPHYT_RS24565: BPHYT_RS24565 - membrane protein, at 1,081,233 to 1,082,342
_RS24565
BPHYT_RS24570: BPHYT_RS24570 - membrane protein, at 1,082,890 to 1,084,050
_RS24570
BPHYT_RS24575: BPHYT_RS24575 - hypothetical protein, at 1,084,068 to 1,084,268
_RS24575
BPHYT_RS24580: BPHYT_RS24580 - hypothetical protein, at 1,084,272 to 1,084,601
_RS24580
BPHYT_RS24585: BPHYT_RS24585 - NUDIX hydrolase, at 1,084,824 to 1,085,411
_RS24585
Position (kb) 1082
1083
1084
1085 Strain fitness (log2 ratio) -1
0
1
2 at 1081.928 kb on - strand, within BPHYT_RS24565 at 1082.501 kb on + strand at 1082.602 kb on + strand at 1082.603 kb on - strand at 1082.622 kb on - strand at 1082.981 kb on - strand at 1082.981 kb on - strand at 1083.038 kb on - strand, within BPHYT_RS24570 at 1083.038 kb on - strand, within BPHYT_RS24570 at 1083.265 kb on + strand, within BPHYT_RS24570 at 1083.323 kb on - strand, within BPHYT_RS24570 at 1083.373 kb on + strand, within BPHYT_RS24570 at 1083.415 kb on + strand, within BPHYT_RS24570 at 1083.417 kb on + strand, within BPHYT_RS24570 at 1083.417 kb on + strand, within BPHYT_RS24570 at 1083.418 kb on - strand, within BPHYT_RS24570 at 1083.418 kb on - strand, within BPHYT_RS24570 at 1083.476 kb on - strand, within BPHYT_RS24570 at 1083.508 kb on + strand, within BPHYT_RS24570 at 1083.613 kb on + strand, within BPHYT_RS24570 at 1083.614 kb on - strand, within BPHYT_RS24570 at 1083.647 kb on - strand, within BPHYT_RS24570 at 1083.649 kb on - strand, within BPHYT_RS24570 at 1083.739 kb on + strand, within BPHYT_RS24570 at 1083.786 kb on - strand, within BPHYT_RS24570 at 1083.809 kb on - strand, within BPHYT_RS24570 at 1083.809 kb on - strand, within BPHYT_RS24570 at 1083.823 kb on + strand, within BPHYT_RS24570 at 1083.883 kb on + strand, within BPHYT_RS24570 at 1084.202 kb on + strand, within BPHYT_RS24575 at 1084.242 kb on - strand at 1084.359 kb on - strand, within BPHYT_RS24580 at 1084.737 kb on - strand at 1084.742 kb on + strand at 1084.999 kb on + strand, within BPHYT_RS24585
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 10 remove 1,081,928 - BPHYT_RS24565 0.63 +2.5 1,082,501 + -0.3 1,082,602 + -1.2 1,082,603 - -0.6 1,082,622 - +0.2 1,082,981 - +0.3 1,082,981 - -1.4 1,083,038 - BPHYT_RS24570 0.13 -0.1 1,083,038 - BPHYT_RS24570 0.13 -0.1 1,083,265 + BPHYT_RS24570 0.32 +0.3 1,083,323 - BPHYT_RS24570 0.37 -0.5 1,083,373 + BPHYT_RS24570 0.42 +0.3 1,083,415 + BPHYT_RS24570 0.45 +0.5 1,083,417 + BPHYT_RS24570 0.45 -0.5 1,083,417 + BPHYT_RS24570 0.45 +1.1 1,083,418 - BPHYT_RS24570 0.45 +0.3 1,083,418 - BPHYT_RS24570 0.45 -1.1 1,083,476 - BPHYT_RS24570 0.50 +0.7 1,083,508 + BPHYT_RS24570 0.53 +0.4 1,083,613 + BPHYT_RS24570 0.62 +0.3 1,083,614 - BPHYT_RS24570 0.62 -0.1 1,083,647 - BPHYT_RS24570 0.65 -0.1 1,083,649 - BPHYT_RS24570 0.65 +2.5 1,083,739 + BPHYT_RS24570 0.73 +1.1 1,083,786 - BPHYT_RS24570 0.77 +0.1 1,083,809 - BPHYT_RS24570 0.79 -1.7 1,083,809 - BPHYT_RS24570 0.79 -0.6 1,083,823 + BPHYT_RS24570 0.80 +0.3 1,083,883 + BPHYT_RS24570 0.86 +0.5 1,084,202 + BPHYT_RS24575 0.67 +0.6 1,084,242 - -1.4 1,084,359 - BPHYT_RS24580 0.26 -0.9 1,084,737 - -0.8 1,084,742 + -0.0 1,084,999 + BPHYT_RS24585 0.30 -0.1
Or see this region's nucleotide sequence