Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23545

Experiment: 36hr PHYTO10 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23540 and BPHYT_RS23545 overlap by 4 nucleotidesBPHYT_RS23545 and BPHYT_RS23550 overlap by 4 nucleotides BPHYT_RS23540: BPHYT_RS23540 - RND transporter, at 847,733 to 849,241 _RS23540 BPHYT_RS23545: BPHYT_RS23545 - nodulation protein, at 849,238 to 852,558 _RS23545 BPHYT_RS23550: BPHYT_RS23550 - multidrug transporter, at 852,555 to 855,680 _RS23550 Position (kb) 849 850 851 852 853Strain fitness (log2 ratio) -2 -1 0 1at 849.351 kb on - strandat 849.756 kb on - strand, within BPHYT_RS23545at 849.812 kb on + strand, within BPHYT_RS23545at 850.251 kb on - strand, within BPHYT_RS23545at 851.009 kb on + strand, within BPHYT_RS23545at 851.426 kb on + strand, within BPHYT_RS23545at 851.879 kb on + strand, within BPHYT_RS23545at 851.879 kb on + strand, within BPHYT_RS23545at 852.306 kb on - strandat 852.474 kb on - strandat 852.647 kb on - strandat 853.040 kb on - strand, within BPHYT_RS23550at 853.040 kb on - strand, within BPHYT_RS23550at 853.099 kb on + strand, within BPHYT_RS23550

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 10
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849,351 - +0.0
849,756 - BPHYT_RS23545 0.16 +0.1
849,812 + BPHYT_RS23545 0.17 -1.9
850,251 - BPHYT_RS23545 0.31 -2.4
851,009 + BPHYT_RS23545 0.53 -1.0
851,426 + BPHYT_RS23545 0.66 -1.4
851,879 + BPHYT_RS23545 0.80 +0.2
851,879 + BPHYT_RS23545 0.80 +0.1
852,306 - -1.4
852,474 - -0.2
852,647 - +0.4
853,040 - BPHYT_RS23550 0.16 -0.5
853,040 - BPHYT_RS23550 0.16 +0.0
853,099 + BPHYT_RS23550 0.17 -0.3

Or see this region's nucleotide sequence