Experiment: 36hr PHYTO10 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22055 and BPHYT_RS22060 are separated by 923 nucleotides BPHYT_RS22060 and BPHYT_RS22065 are separated by 218 nucleotides
BPHYT_RS22055: BPHYT_RS22055 - DNA-binding protein, at 503,655 to 504,227
_RS22055
BPHYT_RS22060: BPHYT_RS22060 - amino acid transporter, at 505,151 to 506,692
_RS22060
BPHYT_RS22065: BPHYT_RS22065 - DNA-binding protein, at 506,911 to 508,383
_RS22065
Position (kb) 505
506
507 Strain fitness (log2 ratio) -1
0
1
2
3 at 504.193 kb on - strand at 504.263 kb on + strand at 504.264 kb on - strand at 504.266 kb on - strand at 504.266 kb on - strand at 504.266 kb on - strand at 504.270 kb on - strand at 504.270 kb on - strand at 504.274 kb on - strand at 504.358 kb on - strand at 504.358 kb on - strand at 504.441 kb on - strand at 504.494 kb on - strand at 504.544 kb on - strand at 504.812 kb on + strand at 504.813 kb on - strand at 504.813 kb on - strand at 504.813 kb on - strand at 505.145 kb on + strand at 505.146 kb on - strand at 505.146 kb on - strand at 505.242 kb on - strand at 505.472 kb on + strand, within BPHYT_RS22060 at 505.472 kb on + strand, within BPHYT_RS22060 at 505.473 kb on - strand, within BPHYT_RS22060 at 505.474 kb on + strand, within BPHYT_RS22060 at 505.474 kb on + strand, within BPHYT_RS22060 at 505.474 kb on + strand, within BPHYT_RS22060 at 505.474 kb on + strand, within BPHYT_RS22060 at 505.475 kb on - strand, within BPHYT_RS22060 at 505.475 kb on - strand, within BPHYT_RS22060 at 505.475 kb on - strand, within BPHYT_RS22060 at 505.475 kb on - strand, within BPHYT_RS22060 at 505.475 kb on - strand, within BPHYT_RS22060 at 505.475 kb on - strand, within BPHYT_RS22060 at 505.475 kb on - strand, within BPHYT_RS22060 at 505.475 kb on - strand, within BPHYT_RS22060 at 505.478 kb on + strand, within BPHYT_RS22060 at 505.478 kb on + strand, within BPHYT_RS22060 at 505.479 kb on - strand, within BPHYT_RS22060 at 505.479 kb on - strand, within BPHYT_RS22060 at 505.553 kb on + strand, within BPHYT_RS22060 at 505.554 kb on - strand, within BPHYT_RS22060 at 505.554 kb on - strand, within BPHYT_RS22060 at 505.595 kb on + strand, within BPHYT_RS22060 at 505.595 kb on + strand, within BPHYT_RS22060 at 505.595 kb on + strand, within BPHYT_RS22060 at 505.599 kb on - strand, within BPHYT_RS22060 at 505.599 kb on - strand, within BPHYT_RS22060 at 505.880 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.006 kb on + strand, within BPHYT_RS22060 at 506.007 kb on - strand, within BPHYT_RS22060 at 506.165 kb on + strand, within BPHYT_RS22060 at 506.165 kb on + strand, within BPHYT_RS22060 at 506.213 kb on + strand, within BPHYT_RS22060 at 506.214 kb on - strand, within BPHYT_RS22060 at 506.214 kb on - strand, within BPHYT_RS22060 at 506.214 kb on - strand, within BPHYT_RS22060 at 506.319 kb on - strand, within BPHYT_RS22060 at 506.327 kb on + strand, within BPHYT_RS22060 at 506.327 kb on + strand, within BPHYT_RS22060 at 506.382 kb on - strand, within BPHYT_RS22060 at 506.420 kb on + strand, within BPHYT_RS22060 at 506.525 kb on - strand, within BPHYT_RS22060 at 506.690 kb on + strand at 506.690 kb on + strand at 506.740 kb on - strand at 506.831 kb on - strand at 506.850 kb on + strand at 506.851 kb on - strand at 506.963 kb on - strand at 507.103 kb on + strand, within BPHYT_RS22065 at 507.103 kb on + strand, within BPHYT_RS22065 at 507.589 kb on + strand, within BPHYT_RS22065
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 10 remove 504,193 - +0.2 504,263 + +1.0 504,264 - +0.3 504,266 - +0.7 504,266 - +0.5 504,266 - -0.2 504,270 - +1.5 504,270 - -0.0 504,274 - +0.5 504,358 - +2.2 504,358 - +0.6 504,441 - +0.9 504,494 - +0.0 504,544 - +0.0 504,812 + +0.7 504,813 - -0.3 504,813 - -1.0 504,813 - +0.9 505,145 + +0.3 505,146 - +1.7 505,146 - +1.4 505,242 - +0.3 505,472 + BPHYT_RS22060 0.21 +0.8 505,472 + BPHYT_RS22060 0.21 +0.2 505,473 - BPHYT_RS22060 0.21 +1.0 505,474 + BPHYT_RS22060 0.21 +1.6 505,474 + BPHYT_RS22060 0.21 +1.3 505,474 + BPHYT_RS22060 0.21 +1.3 505,474 + BPHYT_RS22060 0.21 +1.6 505,475 - BPHYT_RS22060 0.21 +1.6 505,475 - BPHYT_RS22060 0.21 +0.9 505,475 - BPHYT_RS22060 0.21 +0.1 505,475 - BPHYT_RS22060 0.21 +0.2 505,475 - BPHYT_RS22060 0.21 +0.6 505,475 - BPHYT_RS22060 0.21 +0.4 505,475 - BPHYT_RS22060 0.21 +1.5 505,475 - BPHYT_RS22060 0.21 +1.3 505,478 + BPHYT_RS22060 0.21 +1.4 505,478 + BPHYT_RS22060 0.21 +1.3 505,479 - BPHYT_RS22060 0.21 +1.0 505,479 - BPHYT_RS22060 0.21 +0.6 505,553 + BPHYT_RS22060 0.26 +0.2 505,554 - BPHYT_RS22060 0.26 +1.7 505,554 - BPHYT_RS22060 0.26 +1.4 505,595 + BPHYT_RS22060 0.29 +1.3 505,595 + BPHYT_RS22060 0.29 +0.9 505,595 + BPHYT_RS22060 0.29 +0.7 505,599 - BPHYT_RS22060 0.29 +0.9 505,599 - BPHYT_RS22060 0.29 +0.4 505,880 + BPHYT_RS22060 0.47 -0.5 506,006 + BPHYT_RS22060 0.55 +0.6 506,006 + BPHYT_RS22060 0.55 +1.0 506,006 + BPHYT_RS22060 0.55 +1.3 506,006 + BPHYT_RS22060 0.55 +1.3 506,006 + BPHYT_RS22060 0.55 +1.2 506,006 + BPHYT_RS22060 0.55 +0.8 506,006 + BPHYT_RS22060 0.55 +1.5 506,006 + BPHYT_RS22060 0.55 +1.1 506,006 + BPHYT_RS22060 0.55 +1.4 506,007 - BPHYT_RS22060 0.56 +1.1 506,165 + BPHYT_RS22060 0.66 +0.5 506,165 + BPHYT_RS22060 0.66 +0.5 506,213 + BPHYT_RS22060 0.69 +1.4 506,214 - BPHYT_RS22060 0.69 +0.9 506,214 - BPHYT_RS22060 0.69 +1.9 506,214 - BPHYT_RS22060 0.69 +1.1 506,319 - BPHYT_RS22060 0.76 +2.0 506,327 + BPHYT_RS22060 0.76 +0.7 506,327 + BPHYT_RS22060 0.76 +0.9 506,382 - BPHYT_RS22060 0.80 +1.1 506,420 + BPHYT_RS22060 0.82 +1.6 506,525 - BPHYT_RS22060 0.89 +1.3 506,690 + +0.5 506,690 + +0.4 506,740 - +0.8 506,831 - -0.4 506,850 + +0.9 506,851 - +3.4 506,963 - +0.8 507,103 + BPHYT_RS22065 0.13 +1.6 507,103 + BPHYT_RS22065 0.13 +2.4 507,589 + BPHYT_RS22065 0.46 -1.1
Or see this region's nucleotide sequence