Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05285

Experiment: 36hr PHYTO10 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05280 and BPHYT_RS05285 are separated by 608 nucleotidesBPHYT_RS05285 and BPHYT_RS05290 are separated by 792 nucleotides BPHYT_RS05280: BPHYT_RS05280 - transposase, at 1,217,523 to 1,218,692 _RS05280 BPHYT_RS05285: BPHYT_RS05285 - hypothetical protein, at 1,219,301 to 1,219,594 _RS05285 BPHYT_RS05290: BPHYT_RS05290 - hypothetical protein, at 1,220,387 to 1,220,890 _RS05290 Position (kb) 1219 1220Strain fitness (log2 ratio) -3 -2 -1 0 1at 1219.301 kb on - strandat 1219.336 kb on - strand, within BPHYT_RS05285at 1219.613 kb on - strandat 1220.056 kb on - strandat 1220.331 kb on + strandat 1220.386 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 10
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1,219,301 - -1.3
1,219,336 - BPHYT_RS05285 0.12 -2.8
1,219,613 - -2.1
1,220,056 - +0.1
1,220,331 + +0.5
1,220,386 + -1.4

Or see this region's nucleotide sequence