Experiment: 36hr PHYTO10 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03045 and BPHYT_RS03050 overlap by 4 nucleotides BPHYT_RS03050 and BPHYT_RS03055 are separated by 488 nucleotides
BPHYT_RS03045: BPHYT_RS03045 - alcohol dehydrogenase, at 678,626 to 680,011
_RS03045
BPHYT_RS03050: BPHYT_RS03050 - cytochrome C, at 680,008 to 680,721
_RS03050
BPHYT_RS03055: BPHYT_RS03055 - LysR family transcriptional regulator, at 681,210 to 682,097
_RS03055
Position (kb) 680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 679.062 kb on + strand, within BPHYT_RS03045 at 679.062 kb on + strand, within BPHYT_RS03045 at 679.062 kb on + strand, within BPHYT_RS03045 at 679.063 kb on - strand, within BPHYT_RS03045 at 679.077 kb on + strand, within BPHYT_RS03045 at 679.077 kb on + strand, within BPHYT_RS03045 at 679.078 kb on - strand, within BPHYT_RS03045 at 679.101 kb on + strand, within BPHYT_RS03045 at 679.270 kb on + strand, within BPHYT_RS03045 at 679.271 kb on - strand, within BPHYT_RS03045 at 679.320 kb on + strand, within BPHYT_RS03045 at 679.384 kb on - strand, within BPHYT_RS03045 at 679.401 kb on + strand, within BPHYT_RS03045 at 679.402 kb on - strand, within BPHYT_RS03045 at 679.524 kb on + strand, within BPHYT_RS03045 at 679.524 kb on + strand, within BPHYT_RS03045 at 679.524 kb on + strand, within BPHYT_RS03045 at 679.525 kb on - strand, within BPHYT_RS03045 at 679.525 kb on - strand, within BPHYT_RS03045 at 679.656 kb on + strand, within BPHYT_RS03045 at 679.810 kb on + strand, within BPHYT_RS03045 at 679.810 kb on + strand, within BPHYT_RS03045 at 679.811 kb on - strand, within BPHYT_RS03045 at 680.216 kb on + strand, within BPHYT_RS03050 at 680.216 kb on + strand, within BPHYT_RS03050 at 680.432 kb on + strand, within BPHYT_RS03050 at 680.459 kb on + strand, within BPHYT_RS03050 at 680.460 kb on - strand, within BPHYT_RS03050 at 680.475 kb on - strand, within BPHYT_RS03050 at 680.519 kb on + strand, within BPHYT_RS03050 at 680.519 kb on + strand, within BPHYT_RS03050 at 680.552 kb on + strand, within BPHYT_RS03050 at 680.552 kb on + strand, within BPHYT_RS03050 at 680.553 kb on - strand, within BPHYT_RS03050 at 680.671 kb on + strand at 680.671 kb on + strand at 680.678 kb on + strand at 680.679 kb on - strand at 680.706 kb on + strand at 680.706 kb on + strand at 680.747 kb on + strand at 680.748 kb on - strand at 680.760 kb on - strand at 680.810 kb on + strand at 680.810 kb on + strand at 680.810 kb on + strand at 680.839 kb on + strand at 680.841 kb on + strand at 680.842 kb on - strand at 680.921 kb on + strand at 680.921 kb on + strand at 680.922 kb on - strand at 680.923 kb on + strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.008 kb on - strand at 681.040 kb on + strand at 681.080 kb on + strand at 681.080 kb on + strand at 681.081 kb on - strand at 681.375 kb on + strand, within BPHYT_RS03055 at 681.375 kb on + strand, within BPHYT_RS03055 at 681.376 kb on - strand, within BPHYT_RS03055 at 681.443 kb on - strand, within BPHYT_RS03055 at 681.443 kb on - strand, within BPHYT_RS03055 at 681.521 kb on - strand, within BPHYT_RS03055
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 10 remove 679,062 + BPHYT_RS03045 0.31 -0.8 679,062 + BPHYT_RS03045 0.31 +0.5 679,062 + BPHYT_RS03045 0.31 -0.7 679,063 - BPHYT_RS03045 0.32 -1.8 679,077 + BPHYT_RS03045 0.33 -1.3 679,077 + BPHYT_RS03045 0.33 -0.8 679,078 - BPHYT_RS03045 0.33 +1.6 679,101 + BPHYT_RS03045 0.34 -1.0 679,270 + BPHYT_RS03045 0.46 +0.5 679,271 - BPHYT_RS03045 0.47 -1.8 679,320 + BPHYT_RS03045 0.50 -0.4 679,384 - BPHYT_RS03045 0.55 -0.9 679,401 + BPHYT_RS03045 0.56 -0.0 679,402 - BPHYT_RS03045 0.56 -0.6 679,524 + BPHYT_RS03045 0.65 +0.8 679,524 + BPHYT_RS03045 0.65 -2.1 679,524 + BPHYT_RS03045 0.65 -3.3 679,525 - BPHYT_RS03045 0.65 -1.1 679,525 - BPHYT_RS03045 0.65 -0.1 679,656 + BPHYT_RS03045 0.74 -0.3 679,810 + BPHYT_RS03045 0.85 +0.7 679,810 + BPHYT_RS03045 0.85 +0.1 679,811 - BPHYT_RS03045 0.85 -0.6 680,216 + BPHYT_RS03050 0.29 -0.6 680,216 + BPHYT_RS03050 0.29 +0.4 680,432 + BPHYT_RS03050 0.59 +0.3 680,459 + BPHYT_RS03050 0.63 +0.2 680,460 - BPHYT_RS03050 0.63 -1.7 680,475 - BPHYT_RS03050 0.65 +2.6 680,519 + BPHYT_RS03050 0.72 -0.1 680,519 + BPHYT_RS03050 0.72 +0.1 680,552 + BPHYT_RS03050 0.76 +0.3 680,552 + BPHYT_RS03050 0.76 +0.4 680,553 - BPHYT_RS03050 0.76 +0.3 680,671 + +0.2 680,671 + -1.0 680,678 + +0.0 680,679 - -1.3 680,706 + -1.5 680,706 + +0.6 680,747 + -0.3 680,748 - +1.6 680,760 - -0.2 680,810 + +1.2 680,810 + -0.2 680,810 + -0.3 680,839 + +0.6 680,841 + -1.9 680,842 - -0.0 680,921 + +0.8 680,921 + -0.6 680,922 - +2.6 680,923 + +0.4 681,007 + -0.0 681,007 + +0.4 681,008 - -1.9 681,040 + -0.1 681,080 + +0.4 681,080 + +2.0 681,081 - +1.4 681,375 + BPHYT_RS03055 0.19 -1.0 681,375 + BPHYT_RS03055 0.19 -0.5 681,376 - BPHYT_RS03055 0.19 +0.3 681,443 - BPHYT_RS03055 0.26 -0.8 681,443 - BPHYT_RS03055 0.26 -0.6 681,521 - BPHYT_RS03055 0.35 +1.1
Or see this region's nucleotide sequence