Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30310

Experiment: 36hr PHYTO10 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS30300 and BPHYT_RS30305 are separated by 2 nucleotidesBPHYT_RS30305 and BPHYT_RS30310 are separated by 29 nucleotidesBPHYT_RS30310 and BPHYT_RS30315 overlap by 4 nucleotides BPHYT_RS30300: BPHYT_RS30300 - FMN reductase, at 2,354,414 to 2,354,950 _RS30300 BPHYT_RS30305: BPHYT_RS30305 - ethyl tert-butyl ether degradation EthD, at 2,354,953 to 2,355,663 _RS30305 BPHYT_RS30310: BPHYT_RS30310 - LysR family transcriptional regulator, at 2,355,693 to 2,356,643 _RS30310 BPHYT_RS30315: BPHYT_RS30315 - LysR family transcriptional regulator, at 2,356,640 to 2,357,539 _RS30315 Position (kb) 2355 2356 2357Strain fitness (log2 ratio) -1 0 1 2at 2354.874 kb on - strand, within BPHYT_RS30300at 2355.314 kb on - strand, within BPHYT_RS30305at 2355.602 kb on - strandat 2355.633 kb on + strandat 2355.634 kb on - strandat 2355.645 kb on + strandat 2356.585 kb on - strandat 2356.946 kb on + strand, within BPHYT_RS30315at 2357.114 kb on - strand, within BPHYT_RS30315at 2357.114 kb on - strand, within BPHYT_RS30315at 2357.559 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 10
remove
2,354,874 - BPHYT_RS30300 0.86 +0.2
2,355,314 - BPHYT_RS30305 0.51 +0.7
2,355,602 - -0.5
2,355,633 + -0.9
2,355,634 - -0.6
2,355,645 + +1.9
2,356,585 - -0.9
2,356,946 + BPHYT_RS30315 0.34 -1.2
2,357,114 - BPHYT_RS30315 0.53 -0.5
2,357,114 - BPHYT_RS30315 0.53 -1.5
2,357,559 + +0.0

Or see this region's nucleotide sequence