Experiment: 36hr PHYTO10 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21360 and BPHYT_RS21365 are separated by 127 nucleotides BPHYT_RS21365 and BPHYT_RS21370 are separated by 291 nucleotides BPHYT_RS21370 and BPHYT_RS21375 are separated by 156 nucleotides
BPHYT_RS21360: BPHYT_RS21360 - gamma-glutamyltranspeptidase, at 350,909 to 352,642
_RS21360
BPHYT_RS21365: BPHYT_RS21365 - serine protease, at 352,770 to 353,813
_RS21365
BPHYT_RS21370: BPHYT_RS21370 - glyoxalase, at 354,105 to 354,503
_RS21370
BPHYT_RS21375: BPHYT_RS21375 - hypothetical protein, at 354,660 to 355,586
_RS21375
Position (kb) 352
353
354 Strain fitness (log2 ratio) -2
-1
0
1
2 at 351.854 kb on + strand, within BPHYT_RS21360 at 351.854 kb on + strand, within BPHYT_RS21360 at 351.855 kb on - strand, within BPHYT_RS21360 at 351.855 kb on - strand, within BPHYT_RS21360 at 351.929 kb on + strand, within BPHYT_RS21360 at 351.929 kb on + strand, within BPHYT_RS21360 at 351.931 kb on + strand at 351.965 kb on + strand, within BPHYT_RS21360 at 351.965 kb on + strand, within BPHYT_RS21360 at 351.965 kb on + strand, within BPHYT_RS21360 at 351.965 kb on + strand, within BPHYT_RS21360 at 351.967 kb on + strand, within BPHYT_RS21360 at 352.111 kb on + strand, within BPHYT_RS21360 at 352.115 kb on + strand, within BPHYT_RS21360 at 352.115 kb on + strand, within BPHYT_RS21360 at 352.116 kb on - strand, within BPHYT_RS21360 at 352.116 kb on - strand, within BPHYT_RS21360 at 352.116 kb on - strand, within BPHYT_RS21360 at 352.116 kb on - strand, within BPHYT_RS21360 at 352.219 kb on + strand, within BPHYT_RS21360 at 352.219 kb on + strand, within BPHYT_RS21360 at 352.220 kb on - strand, within BPHYT_RS21360 at 352.317 kb on + strand, within BPHYT_RS21360 at 352.388 kb on + strand, within BPHYT_RS21360 at 352.394 kb on + strand, within BPHYT_RS21360 at 352.479 kb on - strand at 352.649 kb on + strand at 352.740 kb on + strand at 352.908 kb on - strand, within BPHYT_RS21365 at 352.925 kb on + strand, within BPHYT_RS21365 at 352.926 kb on - strand at 352.986 kb on + strand, within BPHYT_RS21365 at 353.014 kb on + strand, within BPHYT_RS21365 at 353.065 kb on + strand, within BPHYT_RS21365 at 353.066 kb on - strand, within BPHYT_RS21365 at 353.066 kb on - strand, within BPHYT_RS21365 at 353.066 kb on - strand, within BPHYT_RS21365 at 353.172 kb on - strand, within BPHYT_RS21365 at 353.261 kb on - strand, within BPHYT_RS21365 at 353.310 kb on + strand, within BPHYT_RS21365 at 353.311 kb on - strand, within BPHYT_RS21365 at 353.311 kb on - strand, within BPHYT_RS21365 at 353.514 kb on - strand, within BPHYT_RS21365 at 353.544 kb on - strand, within BPHYT_RS21365 at 353.558 kb on - strand, within BPHYT_RS21365 at 354.048 kb on - strand at 354.351 kb on + strand, within BPHYT_RS21370 at 354.352 kb on - strand, within BPHYT_RS21370 at 354.401 kb on - strand, within BPHYT_RS21370 at 354.445 kb on - strand, within BPHYT_RS21370
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 10 remove 351,854 + BPHYT_RS21360 0.54 -1.6 351,854 + BPHYT_RS21360 0.54 -0.9 351,855 - BPHYT_RS21360 0.55 -0.4 351,855 - BPHYT_RS21360 0.55 -1.9 351,929 + BPHYT_RS21360 0.59 -0.4 351,929 + BPHYT_RS21360 0.59 -0.2 351,931 + +1.6 351,965 + BPHYT_RS21360 0.61 -0.4 351,965 + BPHYT_RS21360 0.61 +0.6 351,965 + BPHYT_RS21360 0.61 -0.3 351,965 + BPHYT_RS21360 0.61 -0.4 351,967 + BPHYT_RS21360 0.61 -0.6 352,111 + BPHYT_RS21360 0.69 -0.9 352,115 + BPHYT_RS21360 0.70 +1.2 352,115 + BPHYT_RS21360 0.70 -0.9 352,116 - BPHYT_RS21360 0.70 -0.7 352,116 - BPHYT_RS21360 0.70 -0.7 352,116 - BPHYT_RS21360 0.70 -1.3 352,116 - BPHYT_RS21360 0.70 +0.8 352,219 + BPHYT_RS21360 0.76 +1.0 352,219 + BPHYT_RS21360 0.76 +0.0 352,220 - BPHYT_RS21360 0.76 -1.8 352,317 + BPHYT_RS21360 0.81 -1.7 352,388 + BPHYT_RS21360 0.85 +0.3 352,394 + BPHYT_RS21360 0.86 -0.3 352,479 - -0.3 352,649 + -0.8 352,740 + -0.9 352,908 - BPHYT_RS21365 0.13 +0.2 352,925 + BPHYT_RS21365 0.15 +0.9 352,926 - +1.0 352,986 + BPHYT_RS21365 0.21 +0.2 353,014 + BPHYT_RS21365 0.23 +2.0 353,065 + BPHYT_RS21365 0.28 -0.1 353,066 - BPHYT_RS21365 0.28 +0.2 353,066 - BPHYT_RS21365 0.28 -0.1 353,066 - BPHYT_RS21365 0.28 -0.4 353,172 - BPHYT_RS21365 0.39 +0.0 353,261 - BPHYT_RS21365 0.47 +0.6 353,310 + BPHYT_RS21365 0.52 -1.0 353,311 - BPHYT_RS21365 0.52 +0.4 353,311 - BPHYT_RS21365 0.52 +0.2 353,514 - BPHYT_RS21365 0.71 -0.2 353,544 - BPHYT_RS21365 0.74 -0.6 353,558 - BPHYT_RS21365 0.75 +1.5 354,048 - +1.5 354,351 + BPHYT_RS21370 0.62 -0.8 354,352 - BPHYT_RS21370 0.62 -1.1 354,401 - BPHYT_RS21370 0.74 -0.4 354,445 - BPHYT_RS21370 0.85 +1.0
Or see this region's nucleotide sequence