Experiment: 36hr PHYTO10 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01180 and BPHYT_RS01185 are separated by 105 nucleotides BPHYT_RS01185 and BPHYT_RS01190 are separated by 153 nucleotides
BPHYT_RS01180: BPHYT_RS01180 - AraC family transcriptional regulator, at 271,084 to 271,878
_RS01180
BPHYT_RS01185: BPHYT_RS01185 - sodium:sulfate symporter, at 271,984 to 273,444
_RS01185
BPHYT_RS01190: BPHYT_RS01190 - hypothetical protein, at 273,598 to 274,338
_RS01190
Position (kb) 271
272
273
274 Strain fitness (log2 ratio) -2
-1
0
1 at 271.001 kb on - strand at 271.059 kb on - strand at 271.607 kb on + strand, within BPHYT_RS01180 at 271.607 kb on + strand, within BPHYT_RS01180 at 271.761 kb on + strand, within BPHYT_RS01180 at 271.931 kb on + strand at 271.932 kb on - strand at 272.128 kb on + strand at 272.129 kb on - strand at 272.129 kb on - strand at 272.419 kb on + strand, within BPHYT_RS01185 at 272.420 kb on - strand, within BPHYT_RS01185 at 272.420 kb on - strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand at 272.599 kb on + strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.601 kb on + strand, within BPHYT_RS01185 at 272.671 kb on + strand, within BPHYT_RS01185 at 272.689 kb on + strand, within BPHYT_RS01185 at 272.698 kb on + strand, within BPHYT_RS01185 at 272.698 kb on + strand, within BPHYT_RS01185 at 272.699 kb on - strand, within BPHYT_RS01185 at 273.010 kb on + strand, within BPHYT_RS01185 at 273.083 kb on + strand, within BPHYT_RS01185 at 273.328 kb on - strand at 273.443 kb on - strand at 273.597 kb on + strand at 273.597 kb on + strand at 273.598 kb on - strand at 273.598 kb on - strand at 273.598 kb on - strand at 274.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 10 remove 271,001 - -1.4 271,059 - +0.2 271,607 + BPHYT_RS01180 0.66 -0.9 271,607 + BPHYT_RS01180 0.66 -0.4 271,761 + BPHYT_RS01180 0.85 -0.3 271,931 + +1.6 271,932 - +0.3 272,128 + -0.1 272,129 - -0.1 272,129 - -0.4 272,419 + BPHYT_RS01185 0.30 +1.0 272,420 - BPHYT_RS01185 0.30 +1.1 272,420 - BPHYT_RS01185 0.30 -0.0 272,599 + BPHYT_RS01185 0.42 -1.8 272,599 + BPHYT_RS01185 0.42 -0.3 272,599 + BPHYT_RS01185 0.42 -0.5 272,599 + -0.0 272,599 + BPHYT_RS01185 0.42 -0.6 272,600 - BPHYT_RS01185 0.42 -0.1 272,600 - BPHYT_RS01185 0.42 -0.1 272,600 - BPHYT_RS01185 0.42 -0.0 272,600 - BPHYT_RS01185 0.42 -0.3 272,601 + BPHYT_RS01185 0.42 +0.3 272,671 + BPHYT_RS01185 0.47 -1.3 272,689 + BPHYT_RS01185 0.48 -0.1 272,698 + BPHYT_RS01185 0.49 -2.3 272,698 + BPHYT_RS01185 0.49 -0.4 272,699 - BPHYT_RS01185 0.49 -0.2 273,010 + BPHYT_RS01185 0.70 +0.6 273,083 + BPHYT_RS01185 0.75 +0.4 273,328 - -0.9 273,443 - +0.6 273,597 + -1.1 273,597 + -0.3 273,598 - -0.0 273,598 - +0.4 273,598 - +0.1 274,376 - -1.0
Or see this region's nucleotide sequence