Experiment: 36hr PHYTO4 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23100 and BPHYT_RS23105 are separated by 81 nucleotides BPHYT_RS23105 and BPHYT_RS23110 are separated by 228 nucleotides BPHYT_RS23110 and BPHYT_RS23115 are separated by 197 nucleotides
BPHYT_RS23100: BPHYT_RS23100 - sugar ABC transporter substrate-binding protein, at 746,386 to 747,333
_RS23100
BPHYT_RS23105: BPHYT_RS23105 - DNA polymerase, at 747,415 to 749,790
_RS23105
BPHYT_RS23110: BPHYT_RS23110 - photosystem reaction center subunit H, at 750,019 to 750,444
_RS23110
BPHYT_RS23115: BPHYT_RS23115 - hypothetical protein, at 750,642 to 751,652
_RS23115
Position (kb) 747
748
749
750 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 746.512 kb on + strand, within BPHYT_RS23100 at 746.513 kb on - strand, within BPHYT_RS23100 at 747.406 kb on - strand at 747.578 kb on + strand at 747.579 kb on - strand at 747.579 kb on - strand at 747.874 kb on - strand, within BPHYT_RS23105 at 747.876 kb on - strand, within BPHYT_RS23105 at 748.057 kb on - strand, within BPHYT_RS23105 at 748.145 kb on + strand, within BPHYT_RS23105 at 748.146 kb on - strand, within BPHYT_RS23105 at 748.147 kb on + strand, within BPHYT_RS23105 at 748.320 kb on + strand, within BPHYT_RS23105 at 748.321 kb on - strand, within BPHYT_RS23105 at 748.641 kb on + strand, within BPHYT_RS23105 at 748.644 kb on - strand, within BPHYT_RS23105 at 748.644 kb on - strand, within BPHYT_RS23105 at 748.781 kb on + strand, within BPHYT_RS23105 at 748.781 kb on + strand, within BPHYT_RS23105 at 749.238 kb on - strand, within BPHYT_RS23105 at 749.444 kb on + strand, within BPHYT_RS23105 at 749.475 kb on - strand, within BPHYT_RS23105 at 749.944 kb on + strand at 749.944 kb on + strand at 749.945 kb on - strand at 750.004 kb on - strand at 750.181 kb on + strand, within BPHYT_RS23110 at 750.358 kb on - strand, within BPHYT_RS23110 at 750.581 kb on - strand at 750.639 kb on + strand at 750.640 kb on - strand at 750.692 kb on + strand at 750.692 kb on + strand at 750.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 0.1 remove 746,512 + BPHYT_RS23100 0.13 -0.1 746,513 - BPHYT_RS23100 0.13 -1.5 747,406 - -0.4 747,578 + -0.1 747,579 - -0.5 747,579 - -0.0 747,874 - BPHYT_RS23105 0.19 +0.7 747,876 - BPHYT_RS23105 0.19 +0.4 748,057 - BPHYT_RS23105 0.27 -0.9 748,145 + BPHYT_RS23105 0.31 +0.5 748,146 - BPHYT_RS23105 0.31 -1.4 748,147 + BPHYT_RS23105 0.31 +0.7 748,320 + BPHYT_RS23105 0.38 -1.9 748,321 - BPHYT_RS23105 0.38 -1.9 748,641 + BPHYT_RS23105 0.52 -0.8 748,644 - BPHYT_RS23105 0.52 +0.2 748,644 - BPHYT_RS23105 0.52 -0.1 748,781 + BPHYT_RS23105 0.57 -1.0 748,781 + BPHYT_RS23105 0.57 -0.2 749,238 - BPHYT_RS23105 0.77 -0.1 749,444 + BPHYT_RS23105 0.85 +1.0 749,475 - BPHYT_RS23105 0.87 -0.2 749,944 + -0.9 749,944 + -0.8 749,945 - +0.0 750,004 - -0.4 750,181 + BPHYT_RS23110 0.38 -0.0 750,358 - BPHYT_RS23110 0.80 -0.2 750,581 - +0.1 750,639 + +0.3 750,640 - -0.3 750,692 + +0.0 750,692 + +3.4 750,694 + -1.1
Or see this region's nucleotide sequence