Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14155

Experiment: 36hr PHYTO4 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14150 and BPHYT_RS14155 are separated by 113 nucleotidesBPHYT_RS14155 and BPHYT_RS14160 are separated by 28 nucleotides BPHYT_RS14150: BPHYT_RS14150 - transposase, at 3,231,180 to 3,232,457 _RS14150 BPHYT_RS14155: BPHYT_RS14155 - phosphoglucosamine mutase, at 3,232,571 to 3,233,929 _RS14155 BPHYT_RS14160: BPHYT_RS14160 - dihydropteroate synthase, at 3,233,958 to 3,234,857 _RS14160 Position (kb) 3232 3233 3234Strain fitness (log2 ratio) -1 0 1at 3231.917 kb on - strand, within BPHYT_RS14150at 3232.464 kb on + strandat 3232.464 kb on + strandat 3232.476 kb on + strandat 3232.477 kb on - strandat 3232.501 kb on + strandat 3232.528 kb on - strandat 3232.528 kb on - strandat 3232.573 kb on - strandat 3234.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 0.1
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3,231,917 - BPHYT_RS14150 0.58 +0.1
3,232,464 + +1.3
3,232,464 + +1.5
3,232,476 + +0.1
3,232,477 - -1.2
3,232,501 + -0.7
3,232,528 - -0.8
3,232,528 - +1.0
3,232,573 - +0.5
3,234,863 - -0.3

Or see this region's nucleotide sequence