Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35285

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,515,735	+				-1.2
3,515,736	-				-1.0
3,515,968	+		BPHYT_RS35280	0.14	-0.1
3,515,971	-		BPHYT_RS35280	0.14	+1.6
3,516,229	-		BPHYT_RS35280	0.49	-0.1
3,516,411	+		BPHYT_RS35280	0.74	-0.5
3,516,411	+		BPHYT_RS35280	0.74	-0.3
3,516,412	-		BPHYT_RS35280	0.74	-2.0
3,516,412	-		BPHYT_RS35280	0.74	+2.6
3,516,444	+		BPHYT_RS35280	0.79	-0.1
3,516,453	+		BPHYT_RS35280	0.80	+0.3
3,516,456	-		BPHYT_RS35280	0.80	-1.1
3,516,456	-		BPHYT_RS35280	0.80	+1.8
3,516,456	-		BPHYT_RS35280	0.80	-2.1
3,516,602	-				+1.3
3,516,643	+				-0.7
3,516,674	-				-0.4
3,516,693	-				+0.1
3,516,693	-				+0.3
3,516,941	+		BPHYT_RS35285	0.14	+1.2
3,516,941	+		BPHYT_RS35285	0.14	+0.7
3,516,942	-		BPHYT_RS35285	0.14	-0.5
3,517,527	-		BPHYT_RS35285	0.52	+0.6
3,517,527	-		BPHYT_RS35285	0.52	+0.2
3,517,527	-		BPHYT_RS35285	0.52	-0.2
3,517,547	+		BPHYT_RS35285	0.53	-0.9
3,517,637	+		BPHYT_RS35285	0.59	-0.4
3,517,712	+		BPHYT_RS35285	0.64	+0.7
3,517,712	+		BPHYT_RS35285	0.64	-0.1
3,517,713	-		BPHYT_RS35285	0.64	+1.1
3,517,713	-		BPHYT_RS35285	0.64	+1.2
3,517,713	-		BPHYT_RS35285	0.64	-0.7
3,517,897	+		BPHYT_RS35285	0.76	+0.6
3,517,897	+		BPHYT_RS35285	0.76	+1.6
3,517,898	-		BPHYT_RS35285	0.76	+1.4
3,518,456	+				-2.3
3,518,456	+				+2.1
3,518,460	+				-1.8
3,518,460	+				-0.4
3,518,460	+				+0.5
3,518,460	+				+2.6
3,518,461	-				-1.5
3,518,461	-				-0.0
3,518,554	+		BPHYT_RS35290	0.20	+1.2
3,518,555	-		BPHYT_RS35290	0.20	+0.2
3,518,609	+		BPHYT_RS35290	0.36	-1.2
3,518,796	-				-0.8
3,518,805	+				-1.3
3,518,824	-				+0.6
3,518,824	-				+0.2
3,518,871	+				+0.3
3,518,882	+				+0.1
3,519,136	+		BPHYT_RS35295	0.31	-0.4