Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34860

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,424,953	+		BPHYT_RS34855	0.88	-0.0
3,424,954	-		BPHYT_RS34855	0.89	+0.5
3,424,954	-		BPHYT_RS34855	0.89	-2.0
3,424,954	-		BPHYT_RS34855	0.89	+0.1
3,424,954	-		BPHYT_RS34855	0.89	-0.4
3,424,982	-				+0.2
3,424,982	-				-1.1
3,424,982	-				-0.4
3,425,025	-				-0.0
3,425,025	-				+0.8
3,425,278	-				+2.5
3,425,315	+				-0.9
3,425,315	+				+0.1
3,425,315	+				-0.0
3,425,315	+				-0.2
3,425,316	-				-0.3
3,425,316	-				-0.1
3,425,341	+				+1.5
3,425,341	+				+0.9
3,425,341	+				-1.6
3,425,349	-				+0.6
3,425,495	+				-0.9
3,425,495	+				-0.3
3,425,495	+				+0.0
3,425,495	+				+1.1
3,425,495	+				-0.9
3,425,573	+				-2.2
3,425,610	+				-0.8
3,425,638	-				+0.1
3,425,638	-				+0.2
3,425,645	-				+0.2
3,425,692	+				-0.9
3,425,693	-				+1.1
3,425,956	-		BPHYT_RS34860	0.37	-1.1
3,425,983	+		BPHYT_RS34860	0.40	-1.7
3,426,450	+				+0.2
3,426,450	+				-1.0
3,426,451	-				+0.5
3,426,492	-				+0.5
3,426,739	+		BPHYT_RS34865	0.32	-0.0
3,426,740	-		BPHYT_RS34865	0.33	+0.1
3,426,790	-		BPHYT_RS34865	0.42	-0.3
3,426,904	+		BPHYT_RS34865	0.63	+1.3
3,426,907	+		BPHYT_RS34865	0.64	-1.4
3,426,908	-		BPHYT_RS34865	0.64	-1.0
3,426,908	-		BPHYT_RS34865	0.64	-0.3
3,427,063	+				+0.8
3,427,064	-				-0.2
3,427,195	-				-0.0
3,427,195	-				-0.6
3,427,363	+		BPHYT_RS34870	0.24	-0.4