Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33080

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33075 and BPHYT_RS33080 are separated by 816 nucleotides BPHYT_RS33075: BPHYT_RS33075 - sulfatase maturase, at 2,998,295 to 2,999,542 _RS33075 BPHYT_RS33080: BPHYT_RS33080 - hypothetical protein, at 3,000,359 to 3,000,769 _RS33080 Position (kb) 3000 3001Strain fitness (log2 ratio) -2 -1 0 1at 2999.711 kb on - strandat 3000.132 kb on - strandat 3000.552 kb on + strand, within BPHYT_RS33080at 3001.154 kb on + strandat 3001.445 kb on - strandat 3001.694 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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2,999,711 - -2.2
3,000,132 - +1.0
3,000,552 + BPHYT_RS33080 0.47 +0.2
3,001,154 + -1.2
3,001,445 - -2.0
3,001,694 + -0.3

Or see this region's nucleotide sequence