Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30450

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30445 and BPHYT_RS30450 are separated by 4 nucleotidesBPHYT_RS30450 and BPHYT_RS30455 are separated by 238 nucleotides BPHYT_RS30445: BPHYT_RS30445 - ABC transporter substrate-binding protein, at 2,388,468 to 2,389,511 _RS30445 BPHYT_RS30450: BPHYT_RS30450 - ABC transporter permease, at 2,389,516 to 2,391,375 _RS30450 BPHYT_RS30455: BPHYT_RS30455 - transketolase, at 2,391,614 to 2,393,575 _RS30455 Position (kb) 2389 2390 2391 2392Strain fitness (log2 ratio) -1 0 1 2at 2389.225 kb on - strand, within BPHYT_RS30445at 2389.458 kb on + strandat 2390.411 kb on - strand, within BPHYT_RS30450at 2392.039 kb on + strand, within BPHYT_RS30455at 2392.039 kb on + strand, within BPHYT_RS30455at 2392.039 kb on + strand, within BPHYT_RS30455at 2392.040 kb on - strand, within BPHYT_RS30455at 2392.040 kb on - strand, within BPHYT_RS30455

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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2,389,225 - BPHYT_RS30445 0.73 +0.1
2,389,458 + +2.4
2,390,411 - BPHYT_RS30450 0.48 -0.8
2,392,039 + BPHYT_RS30455 0.22 +2.0
2,392,039 + BPHYT_RS30455 0.22 +1.1
2,392,039 + BPHYT_RS30455 0.22 -0.4
2,392,040 - BPHYT_RS30455 0.22 +0.4
2,392,040 - BPHYT_RS30455 0.22 +0.9

Or see this region's nucleotide sequence