Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27750 and BPHYT_RS27755 overlap by 23 nucleotides BPHYT_RS27755 and BPHYT_RS27760 overlap by 4 nucleotides BPHYT_RS27760 and BPHYT_RS27765 are separated by 1 nucleotides
BPHYT_RS27750: BPHYT_RS27750 - RND transporter, at 1,787,643 to 1,789,139
_RS27750
BPHYT_RS27755: BPHYT_RS27755 - glycosyl hydrolase family 18, at 1,789,117 to 1,790,202
_RS27755
BPHYT_RS27760: BPHYT_RS27760 - ABC transporter, at 1,790,199 to 1,790,897
_RS27760
BPHYT_RS27765: BPHYT_RS27765 - ABC transporter permease, at 1,790,899 to 1,792,035
_RS27765
Position (kb) 1789
1790
1791 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1788.245 kb on + strand, within BPHYT_RS27750 at 1788.629 kb on + strand, within BPHYT_RS27750 at 1788.630 kb on - strand, within BPHYT_RS27750 at 1788.640 kb on + strand, within BPHYT_RS27750 at 1788.640 kb on + strand, within BPHYT_RS27750 at 1788.641 kb on - strand, within BPHYT_RS27750 at 1788.641 kb on - strand, within BPHYT_RS27750 at 1788.758 kb on - strand, within BPHYT_RS27750 at 1789.133 kb on + strand at 1789.134 kb on - strand at 1789.263 kb on - strand, within BPHYT_RS27755 at 1789.473 kb on - strand, within BPHYT_RS27755 at 1789.532 kb on + strand, within BPHYT_RS27755 at 1789.610 kb on + strand, within BPHYT_RS27755 at 1790.009 kb on + strand, within BPHYT_RS27755 at 1790.132 kb on + strand at 1790.133 kb on - strand at 1790.503 kb on - strand, within BPHYT_RS27760 at 1791.109 kb on - strand, within BPHYT_RS27765
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 1,788,245 + BPHYT_RS27750 0.40 -0.8 1,788,629 + BPHYT_RS27750 0.66 +1.4 1,788,630 - BPHYT_RS27750 0.66 -2.1 1,788,640 + BPHYT_RS27750 0.67 +0.1 1,788,640 + BPHYT_RS27750 0.67 +0.5 1,788,641 - BPHYT_RS27750 0.67 -1.1 1,788,641 - BPHYT_RS27750 0.67 +0.7 1,788,758 - BPHYT_RS27750 0.74 -1.3 1,789,133 + -0.4 1,789,134 - +0.9 1,789,263 - BPHYT_RS27755 0.13 -2.9 1,789,473 - BPHYT_RS27755 0.33 +0.1 1,789,532 + BPHYT_RS27755 0.38 -0.6 1,789,610 + BPHYT_RS27755 0.45 -1.3 1,790,009 + BPHYT_RS27755 0.82 -0.1 1,790,132 + +0.2 1,790,133 - -0.3 1,790,503 - BPHYT_RS27760 0.43 -0.8 1,791,109 - BPHYT_RS27765 0.18 -0.1
Or see this region's nucleotide sequence