Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24375

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
1,033,353	+		BPHYT_RS24370	0.47	+1.0
1,033,353	+		BPHYT_RS24370	0.47	+0.1
1,033,354	-		BPHYT_RS24370	0.47	+0.8
1,033,359	-				+0.8
1,033,359	-		BPHYT_RS24370	0.47	+1.1
1,033,643	+		BPHYT_RS24370	0.66	-0.6
1,033,863	-		BPHYT_RS24370	0.81	-2.3
1,033,927	-		BPHYT_RS24370	0.85	-0.6
1,034,063	+				-0.1
1,034,142	+				-1.3
1,034,142	+				+0.2
1,034,277	-				-0.1
1,034,312	+		BPHYT_RS24375	0.12	-0.2
1,034,316	+		BPHYT_RS24375	0.13	+0.1
1,034,317	-		BPHYT_RS24375	0.13	-0.6
1,034,331	-		BPHYT_RS24375	0.14	+0.3
1,034,753	+		BPHYT_RS24375	0.68	+0.3
1,034,753	+		BPHYT_RS24375	0.68	-1.5
1,034,925	-				-0.7
1,034,993	+				-0.6
1,034,994	-				+0.1
1,035,052	+				-1.1
1,035,053	-				-1.1
1,035,053	-				+1.2
1,035,081	-				+2.4
1,035,081	-				+0.2
1,035,276	-		BPHYT_RS24380	0.21	-1.2
1,035,295	+		BPHYT_RS24380	0.22	-0.3
1,035,296	-		BPHYT_RS24380	0.22	-0.2
1,035,575	-		BPHYT_RS24380	0.43	-0.6
1,035,688	+		BPHYT_RS24380	0.51	-0.5
1,035,789	-		BPHYT_RS24380	0.59	+1.3
1,035,960	+		BPHYT_RS24380	0.71	-0.8
1,035,964	+		BPHYT_RS24380	0.72	+0.2