Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24125
Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO4 MOI 1 |
---|---|---|---|---|---|
remove | |||||
977,837 | - | BPHYT_RS24120 | 0.39 | -0.1 | |
978,087 | + | BPHYT_RS24120 | 0.58 | -0.8 | |
978,184 | - | BPHYT_RS24120 | 0.66 | -1.5 | |
978,370 | - | BPHYT_RS24120 | 0.80 | -0.5 | |
978,725 | - | +0.7 | |||
978,725 | - | +1.7 | |||
978,876 | + | +0.1 | |||
979,348 | + | BPHYT_RS24125 | 0.28 | +0.2 | |
979,734 | + | BPHYT_RS24125 | 0.47 | -1.3 | |
979,791 | + | BPHYT_RS24125 | 0.50 | -1.0 | |
979,903 | - | BPHYT_RS24125 | 0.55 | -0.4 | |
980,767 | - | -0.8 | |||
981,744 | - | -0.9 |
Or see this region's nucleotide sequence