Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23855 and BPHYT_RS23860 are separated by 31 nucleotides BPHYT_RS23860 and BPHYT_RS23865 are separated by 156 nucleotides BPHYT_RS23865 and BPHYT_RS23870 are separated by 320 nucleotides
BPHYT_RS23855: BPHYT_RS23855 - hypothetical protein, at 919,409 to 919,738
_RS23855
BPHYT_RS23860: BPHYT_RS23860 - malonic semialdehyde reductase, at 919,770 to 920,354
_RS23860
BPHYT_RS23865: BPHYT_RS23865 - 2OG-Fe(II) oxygenase, at 920,511 to 921,122
_RS23865
BPHYT_RS23870: BPHYT_RS23870 - LacI family transcription regulator, at 921,443 to 922,429
_RS23870
Position (kb) 920
921
922 Strain fitness (log2 ratio) -1
0
1
2 at 919.583 kb on + strand, within BPHYT_RS23855 at 919.584 kb on - strand, within BPHYT_RS23855 at 919.584 kb on - strand, within BPHYT_RS23855 at 919.719 kb on - strand at 920.241 kb on + strand, within BPHYT_RS23860 at 920.241 kb on + strand, within BPHYT_RS23860 at 920.454 kb on + strand at 920.455 kb on - strand at 920.718 kb on + strand, within BPHYT_RS23865 at 920.719 kb on - strand, within BPHYT_RS23865 at 920.719 kb on - strand, within BPHYT_RS23865 at 920.725 kb on - strand, within BPHYT_RS23865 at 920.816 kb on + strand, within BPHYT_RS23865 at 921.190 kb on - strand at 921.358 kb on + strand at 921.556 kb on + strand, within BPHYT_RS23870 at 921.557 kb on - strand, within BPHYT_RS23870 at 921.771 kb on + strand, within BPHYT_RS23870 at 922.100 kb on - strand, within BPHYT_RS23870 at 922.101 kb on + strand, within BPHYT_RS23870
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 919,583 + BPHYT_RS23855 0.53 +2.4 919,584 - BPHYT_RS23855 0.53 -1.4 919,584 - BPHYT_RS23855 0.53 -1.6 919,719 - +0.1 920,241 + BPHYT_RS23860 0.81 +1.9 920,241 + BPHYT_RS23860 0.81 -1.6 920,454 + -0.5 920,455 - +0.2 920,718 + BPHYT_RS23865 0.34 +0.2 920,719 - BPHYT_RS23865 0.34 -0.0 920,719 - BPHYT_RS23865 0.34 -0.4 920,725 - BPHYT_RS23865 0.35 -0.4 920,816 + BPHYT_RS23865 0.50 +0.3 921,190 - +1.9 921,358 + +1.0 921,556 + BPHYT_RS23870 0.11 -0.0 921,557 - BPHYT_RS23870 0.12 -0.2 921,771 + BPHYT_RS23870 0.33 -0.0 922,100 - BPHYT_RS23870 0.67 +1.0 922,101 + BPHYT_RS23870 0.67 +2.5
Or see this region's nucleotide sequence