Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22910

Experiment: 36hr PHYTO4 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS22905 and BPHYT_RS22910 are separated by 24 nucleotidesBPHYT_RS22910 and BPHYT_RS22915 are separated by 46 nucleotides BPHYT_RS22905: BPHYT_RS22905 - secretin, at 697,566 to 699,353 _RS22905 BPHYT_RS22910: BPHYT_RS22910 - hypothetical protein, at 699,378 to 699,671 _RS22910 BPHYT_RS22915: BPHYT_RS22915 - pilus assembly protein CpaE, at 699,718 to 700,920 _RS22915 Position (kb) 699 700Strain fitness (log2 ratio) -2 -1 0 1 2at 698.492 kb on + strand, within BPHYT_RS22905at 698.706 kb on + strand, within BPHYT_RS22905at 698.707 kb on - strand, within BPHYT_RS22905at 698.707 kb on - strand, within BPHYT_RS22905at 698.769 kb on + strand, within BPHYT_RS22905at 698.770 kb on - strand, within BPHYT_RS22905at 699.186 kb on + strandat 699.352 kb on - strandat 699.594 kb on + strand, within BPHYT_RS22910at 699.715 kb on - strandat 700.180 kb on + strand, within BPHYT_RS22915at 700.353 kb on - strand, within BPHYT_RS22915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
remove
698,492 + BPHYT_RS22905 0.52 +1.6
698,706 + BPHYT_RS22905 0.64 -0.1
698,707 - BPHYT_RS22905 0.64 +0.6
698,707 - BPHYT_RS22905 0.64 +0.4
698,769 + BPHYT_RS22905 0.67 +1.2
698,770 - BPHYT_RS22905 0.67 -0.1
699,186 + +0.2
699,352 - +1.5
699,594 + BPHYT_RS22910 0.73 -1.0
699,715 - +0.2
700,180 + BPHYT_RS22915 0.38 +2.5
700,353 - BPHYT_RS22915 0.53 -1.8

Or see this region's nucleotide sequence