Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22895 and BPHYT_RS22900 are separated by 37 nucleotides BPHYT_RS22900 and BPHYT_RS22905 are separated by 88 nucleotides BPHYT_RS22905 and BPHYT_RS22910 are separated by 24 nucleotides BPHYT_RS22910 and BPHYT_RS22915 are separated by 46 nucleotides
BPHYT_RS22895: BPHYT_RS22895 - peptidase A24, at 696,070 to 696,606
_RS22895
BPHYT_RS22900: BPHYT_RS22900 - pilus assembly protein CpaB, at 696,644 to 697,477
_RS22900
BPHYT_RS22905: BPHYT_RS22905 - secretin, at 697,566 to 699,353
_RS22905
BPHYT_RS22910: BPHYT_RS22910 - hypothetical protein, at 699,378 to 699,671
_RS22910
BPHYT_RS22915: BPHYT_RS22915 - pilus assembly protein CpaE, at 699,718 to 700,920
_RS22915
Position (kb) 697
698
699
700 Strain fitness (log2 ratio) -2
-1
0
1
2 at 696.572 kb on + strand at 696.573 kb on - strand at 697.695 kb on + strand at 697.695 kb on + strand at 697.901 kb on + strand, within BPHYT_RS22905 at 697.902 kb on - strand, within BPHYT_RS22905 at 698.023 kb on - strand, within BPHYT_RS22905 at 698.492 kb on + strand, within BPHYT_RS22905 at 698.706 kb on + strand, within BPHYT_RS22905 at 698.707 kb on - strand, within BPHYT_RS22905 at 698.707 kb on - strand, within BPHYT_RS22905 at 698.769 kb on + strand, within BPHYT_RS22905 at 698.770 kb on - strand, within BPHYT_RS22905 at 699.186 kb on + strand at 699.352 kb on - strand at 699.594 kb on + strand, within BPHYT_RS22910 at 699.715 kb on - strand at 700.180 kb on + strand, within BPHYT_RS22915 at 700.353 kb on - strand, within BPHYT_RS22915
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 696,572 + -2.4 696,573 - -0.2 697,695 + -1.0 697,695 + -1.8 697,901 + BPHYT_RS22905 0.19 +0.5 697,902 - BPHYT_RS22905 0.19 +0.3 698,023 - BPHYT_RS22905 0.26 -2.3 698,492 + BPHYT_RS22905 0.52 +1.6 698,706 + BPHYT_RS22905 0.64 -0.1 698,707 - BPHYT_RS22905 0.64 +0.6 698,707 - BPHYT_RS22905 0.64 +0.4 698,769 + BPHYT_RS22905 0.67 +1.2 698,770 - BPHYT_RS22905 0.67 -0.1 699,186 + +0.2 699,352 - +1.5 699,594 + BPHYT_RS22910 0.73 -1.0 699,715 - +0.2 700,180 + BPHYT_RS22915 0.38 +2.5 700,353 - BPHYT_RS22915 0.53 -1.8
Or see this region's nucleotide sequence