Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22690

Experiment: 36hr PHYTO4 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS22680 and BPHYT_RS22685 overlap by 4 nucleotidesBPHYT_RS22685 and BPHYT_RS22690 are separated by 49 nucleotidesBPHYT_RS22690 and BPHYT_RS22695 are separated by 70 nucleotidesBPHYT_RS22695 and BPHYT_RS22700 are separated by 94 nucleotides BPHYT_RS22680: BPHYT_RS22680 - 3-dehydroquinate dehydratase, at 644,503 to 644,958 _RS22680 BPHYT_RS22685: BPHYT_RS22685 - shikimate 5-dehydrogenase, at 644,955 to 645,869 _RS22685 BPHYT_RS22690: BPHYT_RS22690 - D-galactonate transporter, at 645,919 to 647,295 _RS22690 BPHYT_RS22695: BPHYT_RS22695 - TetR family transcriptional regulator, at 647,366 to 648,061 _RS22695 BPHYT_RS22700: BPHYT_RS22700 - FAD-dependent oxidoreductase, at 648,156 to 649,436 _RS22700 Position (kb) 645 646 647 648Strain fitness (log2 ratio) -2 -1 0 1 2at 644.938 kb on - strandat 645.225 kb on + strand, within BPHYT_RS22685at 645.225 kb on + strand, within BPHYT_RS22685at 645.696 kb on + strand, within BPHYT_RS22685at 646.007 kb on - strandat 646.048 kb on + strandat 646.153 kb on + strand, within BPHYT_RS22690at 646.153 kb on + strand, within BPHYT_RS22690at 646.153 kb on + strand, within BPHYT_RS22690at 646.153 kb on + strand, within BPHYT_RS22690at 646.153 kb on + strand, within BPHYT_RS22690at 646.154 kb on - strand, within BPHYT_RS22690at 646.154 kb on - strand, within BPHYT_RS22690at 646.214 kb on - strand, within BPHYT_RS22690at 646.396 kb on + strand, within BPHYT_RS22690at 646.483 kb on + strand, within BPHYT_RS22690at 646.534 kb on + strand, within BPHYT_RS22690at 646.535 kb on - strand, within BPHYT_RS22690at 646.582 kb on + strand, within BPHYT_RS22690at 646.583 kb on - strand, within BPHYT_RS22690at 646.585 kb on - strand, within BPHYT_RS22690at 646.786 kb on + strand, within BPHYT_RS22690at 646.786 kb on + strand, within BPHYT_RS22690at 646.806 kb on + strand, within BPHYT_RS22690at 646.987 kb on + strand, within BPHYT_RS22690at 646.987 kb on + strand, within BPHYT_RS22690at 646.987 kb on + strand, within BPHYT_RS22690at 646.987 kb on + strand, within BPHYT_RS22690at 646.987 kb on + strand, within BPHYT_RS22690at 646.988 kb on - strand, within BPHYT_RS22690at 646.988 kb on - strand, within BPHYT_RS22690at 647.473 kb on + strand, within BPHYT_RS22695at 647.474 kb on - strand, within BPHYT_RS22695at 647.594 kb on - strand, within BPHYT_RS22695at 647.644 kb on - strand, within BPHYT_RS22695at 647.717 kb on - strand, within BPHYT_RS22695at 647.781 kb on - strand, within BPHYT_RS22695at 647.799 kb on + strand, within BPHYT_RS22695at 647.800 kb on - strand, within BPHYT_RS22695at 647.800 kb on - strand, within BPHYT_RS22695at 647.800 kb on - strand, within BPHYT_RS22695at 647.800 kb on - strand, within BPHYT_RS22695at 647.847 kb on + strand, within BPHYT_RS22695at 647.848 kb on - strand, within BPHYT_RS22695at 647.853 kb on + strand, within BPHYT_RS22695at 647.853 kb on + strand, within BPHYT_RS22695at 647.854 kb on - strand, within BPHYT_RS22695at 647.980 kb on - strand, within BPHYT_RS22695at 647.980 kb on - strand, within BPHYT_RS22695at 648.094 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
remove
644,938 - +0.8
645,225 + BPHYT_RS22685 0.30 -1.3
645,225 + BPHYT_RS22685 0.30 +0.3
645,696 + BPHYT_RS22685 0.81 -0.9
646,007 - -0.6
646,048 + -1.8
646,153 + BPHYT_RS22690 0.17 +0.0
646,153 + BPHYT_RS22690 0.17 -0.0
646,153 + BPHYT_RS22690 0.17 -1.4
646,153 + BPHYT_RS22690 0.17 +0.2
646,153 + BPHYT_RS22690 0.17 +0.7
646,154 - BPHYT_RS22690 0.17 +2.5
646,154 - BPHYT_RS22690 0.17 +1.1
646,214 - BPHYT_RS22690 0.21 +0.4
646,396 + BPHYT_RS22690 0.35 -1.2
646,483 + BPHYT_RS22690 0.41 -1.1
646,534 + BPHYT_RS22690 0.45 -0.0
646,535 - BPHYT_RS22690 0.45 -0.3
646,582 + BPHYT_RS22690 0.48 +0.3
646,583 - BPHYT_RS22690 0.48 +0.0
646,585 - BPHYT_RS22690 0.48 -1.9
646,786 + BPHYT_RS22690 0.63 +0.4
646,786 + BPHYT_RS22690 0.63 -0.3
646,806 + BPHYT_RS22690 0.64 -0.6
646,987 + BPHYT_RS22690 0.78 -0.6
646,987 + BPHYT_RS22690 0.78 -1.5
646,987 + BPHYT_RS22690 0.78 +0.4
646,987 + BPHYT_RS22690 0.78 +2.5
646,987 + BPHYT_RS22690 0.78 -1.1
646,988 - BPHYT_RS22690 0.78 +0.5
646,988 - BPHYT_RS22690 0.78 +0.1
647,473 + BPHYT_RS22695 0.15 -1.7
647,474 - BPHYT_RS22695 0.16 +0.2
647,594 - BPHYT_RS22695 0.33 -0.4
647,644 - BPHYT_RS22695 0.40 +0.2
647,717 - BPHYT_RS22695 0.50 -0.4
647,781 - BPHYT_RS22695 0.60 -0.5
647,799 + BPHYT_RS22695 0.62 -1.2
647,800 - BPHYT_RS22695 0.62 +0.6
647,800 - BPHYT_RS22695 0.62 -1.1
647,800 - BPHYT_RS22695 0.62 +1.3
647,800 - BPHYT_RS22695 0.62 +0.4
647,847 + BPHYT_RS22695 0.69 +0.6
647,848 - BPHYT_RS22695 0.69 +1.9
647,853 + BPHYT_RS22695 0.70 +1.2
647,853 + BPHYT_RS22695 0.70 -0.6
647,854 - BPHYT_RS22695 0.70 -0.8
647,980 - BPHYT_RS22695 0.88 +0.0
647,980 - BPHYT_RS22695 0.88 +0.8
648,094 - +0.1

Or see this region's nucleotide sequence