Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21925

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21915 and BPHYT_RS21920 overlap by 4 nucleotidesBPHYT_RS21920 and BPHYT_RS21925 overlap by 4 nucleotidesBPHYT_RS21925 and BPHYT_RS21930 are separated by 171 nucleotidesBPHYT_RS21930 and BPHYT_RS21935 are separated by 81 nucleotides BPHYT_RS21915: BPHYT_RS21915 - ABC transporter permease, at 474,694 to 475,362 _RS21915 BPHYT_RS21920: BPHYT_RS21920 - ABC transporter ATP-binding protein, at 475,359 to 476,135 _RS21920 BPHYT_RS21925: BPHYT_RS21925 - formimidoylglutamase, at 476,132 to 477,094 _RS21925 BPHYT_RS21930: BPHYT_RS21930 - MarR family transcriptional regulator, at 477,266 to 477,688 _RS21930 BPHYT_RS21935: BPHYT_RS21935 - MarR family transcriptional regulator, at 477,770 to 478,192 _RS21935 Position (kb) 476 477 478Strain fitness (log2 ratio) -1 0 1 2at 475.388 kb on + strandat 476.017 kb on + strand, within BPHYT_RS21920at 476.532 kb on - strand, within BPHYT_RS21925at 476.711 kb on + strand, within BPHYT_RS21925at 477.835 kb on - strand, within BPHYT_RS21935at 477.835 kb on - strand, within BPHYT_RS21935at 477.835 kb on - strand, within BPHYT_RS21935at 477.836 kb on + strand, within BPHYT_RS21935

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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475,388 + +2.4
476,017 + BPHYT_RS21920 0.85 -0.7
476,532 - BPHYT_RS21925 0.42 +0.9
476,711 + BPHYT_RS21925 0.60 +1.3
477,835 - BPHYT_RS21935 0.15 +1.5
477,835 - BPHYT_RS21935 0.15 +0.2
477,835 - BPHYT_RS21935 0.15 -0.2
477,836 + BPHYT_RS21935 0.16 -1.1

Or see this region's nucleotide sequence