Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21295 and BPHYT_RS21300 are separated by 45 nucleotides BPHYT_RS21300 and BPHYT_RS21305 are separated by 139 nucleotides BPHYT_RS21305 and BPHYT_RS21310 are separated by 165 nucleotides
BPHYT_RS21295: BPHYT_RS21295 - AraC family transcriptional regulator, at 337,430 to 338,251
_RS21295
BPHYT_RS21300: BPHYT_RS21300 - membrane protein, at 338,297 to 338,812
_RS21300
BPHYT_RS21305: BPHYT_RS21305 - hypothetical protein, at 338,952 to 339,455
_RS21305
BPHYT_RS21310: BPHYT_RS21310 - porin, at 339,621 to 340,772
_RS21310
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2 at 338.084 kb on + strand, within BPHYT_RS21295 at 338.084 kb on + strand, within BPHYT_RS21295 at 338.085 kb on - strand, within BPHYT_RS21295 at 338.232 kb on - strand at 338.420 kb on - strand, within BPHYT_RS21300 at 338.466 kb on - strand, within BPHYT_RS21300 at 338.536 kb on - strand, within BPHYT_RS21300 at 338.855 kb on + strand at 339.074 kb on - strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.172 kb on + strand, within BPHYT_RS21305 at 339.173 kb on - strand, within BPHYT_RS21305 at 339.199 kb on + strand, within BPHYT_RS21305 at 339.199 kb on + strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.201 kb on + strand, within BPHYT_RS21305 at 339.371 kb on - strand, within BPHYT_RS21305 at 339.467 kb on - strand at 339.525 kb on + strand at 339.606 kb on - strand at 339.623 kb on - strand at 339.742 kb on + strand, within BPHYT_RS21310 at 339.742 kb on + strand, within BPHYT_RS21310 at 339.743 kb on - strand, within BPHYT_RS21310 at 339.757 kb on + strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.784 kb on + strand, within BPHYT_RS21310 at 339.865 kb on + strand, within BPHYT_RS21310 at 339.865 kb on + strand, within BPHYT_RS21310 at 339.865 kb on + strand, within BPHYT_RS21310 at 339.919 kb on + strand, within BPHYT_RS21310 at 339.920 kb on - strand, within BPHYT_RS21310 at 340.010 kb on + strand, within BPHYT_RS21310 at 340.010 kb on + strand, within BPHYT_RS21310 at 340.010 kb on + strand, within BPHYT_RS21310 at 340.011 kb on - strand, within BPHYT_RS21310 at 340.039 kb on + strand, within BPHYT_RS21310 at 340.040 kb on - strand, within BPHYT_RS21310 at 340.045 kb on + strand, within BPHYT_RS21310 at 340.046 kb on - strand, within BPHYT_RS21310 at 340.046 kb on - strand, within BPHYT_RS21310 at 340.046 kb on - strand, within BPHYT_RS21310 at 340.063 kb on + strand, within BPHYT_RS21310 at 340.192 kb on + strand, within BPHYT_RS21310 at 340.255 kb on + strand, within BPHYT_RS21310 at 340.255 kb on + strand, within BPHYT_RS21310 at 340.282 kb on + strand, within BPHYT_RS21310 at 340.283 kb on - strand, within BPHYT_RS21310 at 340.297 kb on + strand, within BPHYT_RS21310 at 340.298 kb on - strand, within BPHYT_RS21310 at 340.298 kb on - strand, within BPHYT_RS21310 at 340.298 kb on - strand, within BPHYT_RS21310 at 340.409 kb on - strand, within BPHYT_RS21310 at 340.427 kb on - strand, within BPHYT_RS21310 at 340.454 kb on - strand, within BPHYT_RS21310 at 340.454 kb on - strand, within BPHYT_RS21310
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 338,084 + BPHYT_RS21295 0.80 -1.9 338,084 + BPHYT_RS21295 0.80 -0.1 338,085 - BPHYT_RS21295 0.80 -0.2 338,232 - +0.2 338,420 - BPHYT_RS21300 0.24 -1.6 338,466 - BPHYT_RS21300 0.33 -1.4 338,536 - BPHYT_RS21300 0.46 -0.5 338,855 + -0.0 339,074 - BPHYT_RS21305 0.24 +1.1 339,131 + BPHYT_RS21305 0.36 +1.7 339,131 + BPHYT_RS21305 0.36 -0.4 339,131 + BPHYT_RS21305 0.36 +0.2 339,172 + BPHYT_RS21305 0.44 -1.1 339,173 - BPHYT_RS21305 0.44 -0.2 339,199 + BPHYT_RS21305 0.49 +1.1 339,199 + BPHYT_RS21305 0.49 -1.6 339,200 - BPHYT_RS21305 0.49 +0.7 339,200 - BPHYT_RS21305 0.49 -1.6 339,200 - BPHYT_RS21305 0.49 -0.4 339,200 - BPHYT_RS21305 0.49 +0.3 339,200 - BPHYT_RS21305 0.49 -0.9 339,200 - BPHYT_RS21305 0.49 +1.0 339,201 + BPHYT_RS21305 0.49 +0.3 339,371 - BPHYT_RS21305 0.83 +1.1 339,467 - +0.0 339,525 + -0.5 339,606 - +2.0 339,623 - -1.3 339,742 + BPHYT_RS21310 0.11 +0.1 339,742 + BPHYT_RS21310 0.11 +1.6 339,743 - BPHYT_RS21310 0.11 -0.6 339,757 + BPHYT_RS21310 0.12 -2.0 339,758 - BPHYT_RS21310 0.12 -0.2 339,758 - BPHYT_RS21310 0.12 -0.5 339,758 - BPHYT_RS21310 0.12 -0.3 339,758 - BPHYT_RS21310 0.12 -0.1 339,784 + BPHYT_RS21310 0.14 -0.4 339,865 + BPHYT_RS21310 0.21 -1.5 339,865 + BPHYT_RS21310 0.21 -0.6 339,865 + BPHYT_RS21310 0.21 -0.2 339,919 + BPHYT_RS21310 0.26 -0.2 339,920 - BPHYT_RS21310 0.26 -0.3 340,010 + BPHYT_RS21310 0.34 -0.3 340,010 + BPHYT_RS21310 0.34 -1.5 340,010 + BPHYT_RS21310 0.34 +0.2 340,011 - BPHYT_RS21310 0.34 +0.2 340,039 + BPHYT_RS21310 0.36 -0.1 340,040 - BPHYT_RS21310 0.36 +0.5 340,045 + BPHYT_RS21310 0.37 -1.2 340,046 - BPHYT_RS21310 0.37 -0.8 340,046 - BPHYT_RS21310 0.37 -1.2 340,046 - BPHYT_RS21310 0.37 -0.0 340,063 + BPHYT_RS21310 0.38 +0.3 340,192 + BPHYT_RS21310 0.50 -0.1 340,255 + BPHYT_RS21310 0.55 -0.9 340,255 + BPHYT_RS21310 0.55 -0.9 340,282 + BPHYT_RS21310 0.57 +1.2 340,283 - BPHYT_RS21310 0.57 -1.2 340,297 + BPHYT_RS21310 0.59 +1.3 340,298 - BPHYT_RS21310 0.59 -0.5 340,298 - BPHYT_RS21310 0.59 +0.4 340,298 - BPHYT_RS21310 0.59 -1.6 340,409 - BPHYT_RS21310 0.68 -1.5 340,427 - BPHYT_RS21310 0.70 -0.4 340,454 - BPHYT_RS21310 0.72 -0.0 340,454 - BPHYT_RS21310 0.72 -2.4
Or see this region's nucleotide sequence