Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21200

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21195 and BPHYT_RS21200 are separated by 123 nucleotidesBPHYT_RS21200 and BPHYT_RS21205 overlap by 7 nucleotides BPHYT_RS21195: BPHYT_RS21195 - hypothetical protein, at 317,496 to 318,581 _RS21195 BPHYT_RS21200: BPHYT_RS21200 - hypothetical protein, at 318,705 to 319,337 _RS21200 BPHYT_RS21205: BPHYT_RS21205 - high-affinity nickel-transporter, at 319,331 to 320,455 _RS21205 Position (kb) 318 319 320Strain fitness (log2 ratio) -2 -1 0 1at 317.987 kb on - strand, within BPHYT_RS21195at 318.248 kb on + strand, within BPHYT_RS21195at 318.390 kb on + strand, within BPHYT_RS21195at 318.484 kb on - strandat 318.584 kb on - strandat 319.014 kb on + strand, within BPHYT_RS21200at 319.106 kb on + strand, within BPHYT_RS21200at 319.229 kb on - strand, within BPHYT_RS21200at 319.304 kb on + strandat 319.766 kb on - strand, within BPHYT_RS21205at 319.899 kb on + strand, within BPHYT_RS21205at 319.900 kb on - strand, within BPHYT_RS21205at 320.050 kb on - strand, within BPHYT_RS21205at 320.211 kb on + strand, within BPHYT_RS21205at 320.211 kb on + strand, within BPHYT_RS21205

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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317,987 - BPHYT_RS21195 0.45 -0.8
318,248 + BPHYT_RS21195 0.69 -0.2
318,390 + BPHYT_RS21195 0.82 -0.1
318,484 - +0.0
318,584 - +0.6
319,014 + BPHYT_RS21200 0.49 +0.1
319,106 + BPHYT_RS21200 0.63 -2.0
319,229 - BPHYT_RS21200 0.83 +0.0
319,304 + +0.1
319,766 - BPHYT_RS21205 0.39 +0.7
319,899 + BPHYT_RS21205 0.50 +0.3
319,900 - BPHYT_RS21205 0.51 +0.2
320,050 - BPHYT_RS21205 0.64 +0.8
320,211 + BPHYT_RS21205 0.78 -0.9
320,211 + BPHYT_RS21205 0.78 -0.1

Or see this region's nucleotide sequence