Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20880

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20875 and BPHYT_RS20880 are separated by 197 nucleotidesBPHYT_RS20880 and BPHYT_RS20885 are separated by 187 nucleotidesBPHYT_RS20885 and BPHYT_RS20890 are separated by 94 nucleotides BPHYT_RS20875: BPHYT_RS20875 - hypothetical protein, at 245,467 to 245,748 _RS20875 BPHYT_RS20880: BPHYT_RS20880 - polyketide cyclase, at 245,946 to 246,491 _RS20880 BPHYT_RS20885: BPHYT_RS20885 - nuclear protein SET, at 246,679 to 247,119 _RS20885 BPHYT_RS20890: BPHYT_RS20890 - transglycosylase, at 247,214 to 247,465 _RS20890 Position (kb) 245 246 247Strain fitness (log2 ratio) -1 0 1 2at 246.089 kb on - strand, within BPHYT_RS20880at 246.635 kb on - strandat 246.678 kb on + strandat 246.695 kb on + strandat 247.005 kb on + strand, within BPHYT_RS20885at 247.013 kb on - strand, within BPHYT_RS20885at 247.060 kb on + strand, within BPHYT_RS20885at 247.122 kb on + strandat 247.271 kb on - strand, within BPHYT_RS20890at 247.372 kb on + strand, within BPHYT_RS20890

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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246,089 - BPHYT_RS20880 0.26 -0.9
246,635 - +1.4
246,678 + +2.1
246,695 + -0.9
247,005 + BPHYT_RS20885 0.74 +1.0
247,013 - BPHYT_RS20885 0.76 +0.5
247,060 + BPHYT_RS20885 0.86 +1.6
247,122 + -0.2
247,271 - BPHYT_RS20890 0.23 +0.8
247,372 + BPHYT_RS20890 0.63 +0.7

Or see this region's nucleotide sequence