Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18935

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
4,250,281	+				+1.5
4,250,282	-				+0.3
4,250,326	+				-2.4
4,250,326	+				+0.1
4,250,326	+				+0.4
4,250,326	+				+0.1
4,250,326	+				-0.6
4,250,327	-				+0.5
4,250,327	-				+0.8
4,250,327	-				-0.5
4,250,327	-				+0.6
4,250,463	-		BPHYT_RS18930	0.12	-2.0
4,250,463	-		BPHYT_RS18930	0.12	-0.3
4,250,577	+		BPHYT_RS18930	0.25	+0.1
4,250,578	-		BPHYT_RS18930	0.25	+0.2
4,250,609	+		BPHYT_RS18930	0.29	-0.0
4,250,647	-		BPHYT_RS18930	0.33	+1.5
4,250,711	+		BPHYT_RS18930	0.40	+0.0
4,250,712	-		BPHYT_RS18930	0.41	-1.5
4,250,712	-		BPHYT_RS18930	0.41	-2.0
4,250,736	-		BPHYT_RS18930	0.43	-1.1
4,251,070	+		BPHYT_RS18930	0.82	+0.9
4,251,222	+				-0.7
4,251,222	+				-0.3
4,251,223	-				-0.3
4,251,373	-				+0.0
4,251,408	+				+1.0
4,251,408	+				-1.8
4,251,409	-				+0.2
4,251,952	-		BPHYT_RS18935	0.38	+0.2
4,252,441	+		BPHYT_RS18935	0.63	+0.0
4,252,441	+		BPHYT_RS18935	0.63	+0.9
4,252,443	+		BPHYT_RS18935	0.63	+0.5
4,252,444	-		BPHYT_RS18935	0.63	-2.7
4,252,444	-		BPHYT_RS18935	0.63	-0.1
4,252,444	-		BPHYT_RS18935	0.63	+0.7
4,252,444	-		BPHYT_RS18935	0.63	+0.1
4,252,776	+		BPHYT_RS18935	0.81	+1.5
4,252,776	+		BPHYT_RS18935	0.81	+0.7
4,252,776	+		BPHYT_RS18935	0.81	-0.0
4,252,777	-		BPHYT_RS18935	0.81	+0.2
4,252,777	-		BPHYT_RS18935	0.81	+0.1
4,253,119	+				-1.7
4,253,119	+				+0.1
4,253,120	-				-2.1
4,253,120	-				-0.8
4,253,120	-				+0.7
4,253,120	-				+0.5
4,253,135	-				-1.7
4,253,174	+				+1.1
4,253,191	-				-0.2
4,253,191	-				-0.8
4,253,191	-				-2.0
4,253,213	-				+0.2
4,253,245	+				-0.4
4,253,245	+				+0.1
4,253,245	+				-0.1
4,253,510	+				+0.5
4,253,511	-				-0.5
4,253,536	+				+0.4
4,253,536	+				+0.5
4,253,536	+				-0.6
4,253,678	+				+0.4
4,253,678	+				-0.4
4,253,679	-				-0.2
4,253,767	-		BPHYT_RS18940	0.14	-0.4
4,253,767	-		BPHYT_RS18940	0.14	-0.1
4,253,775	-		BPHYT_RS18940	0.14	-1.6
4,254,036	+		BPHYT_RS18940	0.27	-0.8
4,254,036	+		BPHYT_RS18940	0.27	+0.2
4,254,037	-		BPHYT_RS18940	0.27	+0.9
4,254,127	+		BPHYT_RS18940	0.31	+1.7
4,254,127	+		BPHYT_RS18940	0.31	-0.5
4,254,128	-		BPHYT_RS18940	0.31	-1.0
4,254,133	+		BPHYT_RS18940	0.31	-0.2
4,254,133	+		BPHYT_RS18940	0.31	-0.1
4,254,133	+		BPHYT_RS18940	0.31	+0.3
4,254,133	+		BPHYT_RS18940	0.31	+0.7
4,254,133	+		BPHYT_RS18940	0.31	-0.9
4,254,134	-		BPHYT_RS18940	0.31	+0.2
4,254,134	-		BPHYT_RS18940	0.31	-0.2
4,254,134	-		BPHYT_RS18940	0.31	+0.1