Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16940

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,840,744	+		BPHYT_RS16935	0.32	-0.2
3,840,924	+		BPHYT_RS16935	0.50	-0.1
3,840,925	-		BPHYT_RS16935	0.50	-1.2
3,841,017	+		BPHYT_RS16935	0.59	-0.5
3,841,017	+		BPHYT_RS16935	0.59	-1.6
3,841,027	+		BPHYT_RS16935	0.60	+1.1
3,841,033	+		BPHYT_RS16935	0.61	-0.8
3,841,444	+				+1.7
3,841,445	-				-0.7
3,841,445	-				-1.5
3,841,445	-				+0.5
3,841,520	+				-0.5
3,841,771	+		BPHYT_RS16940	0.28	-0.5
3,841,772	-		BPHYT_RS16940	0.28	-1.0
3,841,813	+		BPHYT_RS16940	0.33	-0.2
3,842,073	+		BPHYT_RS16940	0.66	-0.9
3,842,073	+		BPHYT_RS16940	0.66	-0.4
3,842,073	+		BPHYT_RS16940	0.66	-1.7
3,842,073	+		BPHYT_RS16940	0.66	-0.4
3,842,074	-		BPHYT_RS16940	0.67	-1.0
3,842,373	+				-0.2
3,842,374	-				+0.3
3,842,419	+		BPHYT_RS16945	0.13	-0.1
3,842,421	+		BPHYT_RS16945	0.13	-0.4
3,842,421	+		BPHYT_RS16945	0.13	+0.6
3,842,422	-		BPHYT_RS16945	0.14	-1.2
3,842,422	-				+2.3
3,842,492	-		BPHYT_RS16945	0.24	-3.6
3,842,979	+				-0.4
3,842,979	+				-0.4
3,842,980	-				+0.2
3,843,301	-		BPHYT_RS16950	0.24	+0.1
3,843,301	-		BPHYT_RS16950	0.24	+2.9
3,843,301	-		BPHYT_RS16950	0.24	-0.7