Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16925

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,836,695	+		BPHYT_RS16915	0.83	-1.6
3,836,695	+		BPHYT_RS16915	0.83	-0.2
3,836,695	+		BPHYT_RS16915	0.83	-0.5
3,836,696	-		BPHYT_RS16915	0.83	-1.6
3,836,696	-		BPHYT_RS16915	0.83	-0.8
3,837,048	+		BPHYT_RS16920	0.25	-0.5
3,837,049	-		BPHYT_RS16920	0.25	-0.8
3,837,049	-		BPHYT_RS16920	0.25	-0.1
3,837,128	+		BPHYT_RS16920	0.35	-0.7
3,837,129	-		BPHYT_RS16920	0.35	+2.5
3,837,129	-		BPHYT_RS16920	0.35	+1.3
3,837,129	-		BPHYT_RS16920	0.35	+1.2
3,837,207	+		BPHYT_RS16920	0.45	-0.7
3,837,249	+		BPHYT_RS16920	0.50	-0.3
3,837,250	-		BPHYT_RS16920	0.51	+0.2
3,837,259	+		BPHYT_RS16920	0.52	+0.1
3,837,259	+		BPHYT_RS16920	0.52	-0.2
3,837,259	+		BPHYT_RS16920	0.52	+0.3
3,837,260	-		BPHYT_RS16920	0.52	+0.5
3,837,759	-				+0.4
3,837,765	-				-1.6
3,837,765	-				+0.3
3,837,765	-				-0.3
3,837,942	+		BPHYT_RS16925	0.25	+0.3
3,837,943	-		BPHYT_RS16925	0.25	-0.2
3,837,943	-		BPHYT_RS16925	0.25	+0.7
3,838,071	+		BPHYT_RS16925	0.38	+1.0
3,838,071	+		BPHYT_RS16925	0.38	+0.7
3,838,071	+		BPHYT_RS16925	0.38	+0.2
3,838,083	-		BPHYT_RS16925	0.39	+0.5
3,838,183	-		BPHYT_RS16925	0.49	+1.8
3,838,293	-		BPHYT_RS16925	0.60	+0.1
3,838,369	-		BPHYT_RS16925	0.67	+0.6
3,838,369	-		BPHYT_RS16925	0.67	+0.1
3,838,985	+		BPHYT_RS16930	0.15	-2.1
3,838,985	+		BPHYT_RS16930	0.15	-0.2
3,839,216	+		BPHYT_RS16930	0.30	+0.5
3,839,217	-		BPHYT_RS16930	0.30	+0.2
3,839,236	-		BPHYT_RS16930	0.31	-0.4
3,839,556	+		BPHYT_RS16930	0.52	-1.1
3,839,557	-		BPHYT_RS16930	0.52	-1.4
3,839,558	+		BPHYT_RS16930	0.52	-0.5
3,839,558	+		BPHYT_RS16930	0.52	-1.1
3,839,558	+		BPHYT_RS16930	0.52	+0.5
3,839,558	+		BPHYT_RS16930	0.52	+2.3
3,839,558	+		BPHYT_RS16930	0.52	+0.3
3,839,558	+		BPHYT_RS16930	0.52	+0.1
3,839,558	+		BPHYT_RS16930	0.52	-0.4
3,839,559	-		BPHYT_RS16930	0.52	-1.5
3,839,559	-		BPHYT_RS16930	0.52	-1.5
3,839,559	-		BPHYT_RS16930	0.52	+0.9
3,839,561	-		BPHYT_RS16930	0.52	+0.4
3,839,563	-		BPHYT_RS16930	0.52	+0.1
3,839,684	+		BPHYT_RS16930	0.60	-1.0