Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16195

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,676,001	+		BPHYT_RS16190	0.49	-0.4
3,676,002	-		BPHYT_RS16190	0.50	-1.3
3,676,002	-		BPHYT_RS16190	0.50	+0.3
3,676,157	+		BPHYT_RS16190	0.65	-0.3
3,676,157	+		BPHYT_RS16190	0.65	-0.8
3,676,157	+		BPHYT_RS16190	0.65	-0.6
3,676,246	+		BPHYT_RS16190	0.74	+0.8
3,676,247	-		BPHYT_RS16190	0.74	-1.8
3,676,679	+				+0.5
3,676,680	-				-0.4
3,676,680	-				+0.2
3,676,680	-				+0.1
3,676,680	-				+0.8
3,676,680	-				-1.1
3,676,680	-				-0.3
3,676,680	-				-2.0
3,676,680	-				-0.6
3,676,854	+		BPHYT_RS16195	0.27	-0.6
3,677,057	+		BPHYT_RS16195	0.53	-0.0
3,677,058	-		BPHYT_RS16195	0.53	-1.8
3,677,282	+		BPHYT_RS16195	0.83	-1.1
3,677,495	+		BPHYT_RS16200	0.12	-0.8
3,677,496	-		BPHYT_RS16200	0.13	-0.8
3,677,535	-		BPHYT_RS16200	0.23	-0.2
3,677,585	+		BPHYT_RS16200	0.35	-0.0
3,677,669	+		BPHYT_RS16200	0.57	-0.7
3,677,669	+		BPHYT_RS16200	0.57	+0.4
3,677,991	-				+3.7
3,678,005	+				+1.0
3,678,005	+				+0.1
3,678,005	+				-0.4
3,678,071	+		BPHYT_RS16205	0.16	+0.1
3,678,071	+		BPHYT_RS16205	0.16	+0.6
3,678,117	+		BPHYT_RS16205	0.26	-0.8
3,678,117	+		BPHYT_RS16205	0.26	+1.5
3,678,117	+		BPHYT_RS16205	0.26	+0.3
3,678,118	-		BPHYT_RS16205	0.26	+0.8
3,678,118	-		BPHYT_RS16205	0.26	+0.2
3,678,118	-		BPHYT_RS16205	0.26	+0.3
3,678,120	-		BPHYT_RS16205	0.26	+2.7
3,678,120	-		BPHYT_RS16205	0.26	-0.8
3,678,120	-		BPHYT_RS16205	0.26	-0.3
3,678,120	-		BPHYT_RS16205	0.26	-0.0
3,678,120	-		BPHYT_RS16205	0.26	+0.2
3,678,120	-		BPHYT_RS16205	0.26	-0.5
3,678,156	+		BPHYT_RS16205	0.34	-1.2
3,678,404	+		BPHYT_RS16205	0.83	-0.1
3,678,404	+		BPHYT_RS16205	0.83	+0.5
3,678,405	-		BPHYT_RS16205	0.84	+0.2