Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16150

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,661,674	-				-0.3
3,661,759	+				-0.4
3,661,759	+				-0.2
3,661,760	-				-0.2
3,661,760	-				-0.3
3,661,763	-				-0.5
3,661,774	+				+1.0
3,661,942	+		BPHYT_RS16145	0.29	+0.4
3,661,942	+		BPHYT_RS16145	0.29	+0.1
3,662,179	+		BPHYT_RS16145	0.56	-1.3
3,662,180	-		BPHYT_RS16145	0.57	-0.6
3,662,180	-		BPHYT_RS16145	0.57	-1.1
3,662,180	-		BPHYT_RS16145	0.57	+0.7
3,662,180	-		BPHYT_RS16145	0.57	+0.2
3,662,185	+		BPHYT_RS16145	0.57	-0.4
3,662,185	+		BPHYT_RS16145	0.57	-1.4
3,662,185	+		BPHYT_RS16145	0.57	+1.6
3,662,185	+		BPHYT_RS16145	0.57	-0.4
3,662,398	+		BPHYT_RS16145	0.82	+0.4
3,662,398	+		BPHYT_RS16145	0.82	-0.3
3,662,399	-		BPHYT_RS16145	0.82	-1.2
3,662,399	-		BPHYT_RS16145	0.82	-0.2
3,662,450	-		BPHYT_RS16145	0.88	-1.6
3,662,450	-		BPHYT_RS16145	0.88	-1.2
3,662,450	-		BPHYT_RS16145	0.88	-0.5
3,662,497	+				-2.1
3,662,498	-				+0.3
3,662,568	+				-2.1
3,662,686	-		BPHYT_RS16150	0.11	-2.8
3,662,899	-		BPHYT_RS16150	0.30	-1.1
3,663,133	-		BPHYT_RS16150	0.51	-1.1
3,663,175	-		BPHYT_RS16150	0.55	+0.9
3,663,175	-		BPHYT_RS16150	0.55	-0.5
3,663,175	-		BPHYT_RS16150	0.55	+0.1
3,663,240	+		BPHYT_RS16150	0.61	+0.2
3,663,240	+		BPHYT_RS16150	0.61	-1.2
3,663,240	+		BPHYT_RS16150	0.61	-2.0
3,663,241	-		BPHYT_RS16150	0.61	-0.5
3,663,241	-		BPHYT_RS16150	0.61	-0.2
3,663,268	-		BPHYT_RS16150	0.64	+0.1
3,663,406	+		BPHYT_RS16150	0.76	+0.4
3,663,537	+		BPHYT_RS16150	0.88	+0.4
3,663,537	+		BPHYT_RS16150	0.88	+0.4
3,663,537	+		BPHYT_RS16150	0.88	-0.4
3,663,538	-		BPHYT_RS16150	0.88	-1.6
3,663,538	-		BPHYT_RS16150	0.88	-1.6
3,663,538	-		BPHYT_RS16150	0.88	-0.4
3,663,557	-		BPHYT_RS16150	0.90	+0.2
3,663,686	-				-0.0
3,663,826	+				-0.5
3,663,827	-				-1.8
3,663,853	+				-2.0
3,663,853	+				+1.4
3,663,854	-				+0.0
3,664,367	+		BPHYT_RS16155	0.31	+0.2
3,664,489	+		BPHYT_RS16155	0.40	-3.0
3,664,490	+		BPHYT_RS16155	0.40	-2.0
3,664,490	+		BPHYT_RS16155	0.40	-1.7
3,664,490	+		BPHYT_RS16155	0.40	+1.1
3,664,490	+		BPHYT_RS16155	0.40	-0.5
3,664,491	-		BPHYT_RS16155	0.40	-0.0
3,664,491	-		BPHYT_RS16155	0.40	+0.9