Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14995

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,407,148	+		BPHYT_RS14990	0.38	+0.1
3,407,148	+		BPHYT_RS14990	0.38	-0.4
3,407,148	+		BPHYT_RS14990	0.38	+1.7
3,407,148	+		BPHYT_RS14990	0.38	-0.6
3,407,149	-		BPHYT_RS14990	0.38	-0.6
3,407,149	-		BPHYT_RS14990	0.38	-0.8
3,407,208	-		BPHYT_RS14990	0.42	-0.2
3,407,208	-		BPHYT_RS14990	0.42	+0.5
3,407,211	+		BPHYT_RS14990	0.42	+0.0
3,407,211	+		BPHYT_RS14990	0.42	+2.0
3,407,211	+		BPHYT_RS14990	0.42	-0.3
3,407,212	-		BPHYT_RS14990	0.42	+1.0
3,407,212	-		BPHYT_RS14990	0.42	+5.0
3,407,352	+		BPHYT_RS14990	0.51	-0.4
3,407,352	+		BPHYT_RS14990	0.51	+3.1
3,407,353	-		BPHYT_RS14990	0.51	+0.3
3,407,357	-		BPHYT_RS14990	0.51	-1.5
3,407,397	-		BPHYT_RS14990	0.54	-0.1
3,407,526	+		BPHYT_RS14990	0.62	-0.6
3,407,715	+		BPHYT_RS14990	0.74	+1.0
3,407,715	+		BPHYT_RS14990	0.74	+0.8
3,407,715	+		BPHYT_RS14990	0.74	+0.8
3,408,088	+				-1.4
3,408,088	+				+1.0
3,408,089	-				+1.6
3,408,089	-				+0.1
3,408,089	-				-0.4
3,408,089	-				+0.0
3,408,187	+				-0.0
3,408,360	+				+0.7
3,408,361	-				+0.6
3,408,361	-				+0.3
3,408,539	+		BPHYT_RS14995	0.14	-1.4
3,408,539	+		BPHYT_RS14995	0.14	-1.3
3,408,539	+		BPHYT_RS14995	0.14	+1.4
3,408,539	+				+1.4
3,408,539	+		BPHYT_RS14995	0.14	-0.0
3,408,539	+		BPHYT_RS14995	0.14	-1.4
3,408,539	+		BPHYT_RS14995	0.14	+0.4
3,408,539	+		BPHYT_RS14995	0.14	-0.5
3,408,539	+		BPHYT_RS14995	0.14	-0.2
3,408,540	-		BPHYT_RS14995	0.14	-0.6
3,408,540	-		BPHYT_RS14995	0.14	+0.4
3,408,540	-		BPHYT_RS14995	0.14	-1.4
3,408,540	-		BPHYT_RS14995	0.14	-0.3
3,408,541	+		BPHYT_RS14995	0.14	-1.2
3,408,541	+		BPHYT_RS14995	0.14	-0.5
3,408,541	+				+0.8
3,409,173	-		BPHYT_RS14995	0.35	-2.4
3,409,173	-		BPHYT_RS14995	0.35	+0.1
3,409,234	+		BPHYT_RS14995	0.37	-0.7
3,409,234	+		BPHYT_RS14995	0.37	-1.4
3,409,234	+		BPHYT_RS14995	0.37	-0.7
3,409,265	+		BPHYT_RS14995	0.38	-0.1
3,409,265	+		BPHYT_RS14995	0.38	-0.0
3,409,266	-		BPHYT_RS14995	0.38	+0.7
3,409,266	-				+2.4
3,409,266	-		BPHYT_RS14995	0.38	-0.9
3,409,266	-		BPHYT_RS14995	0.38	-0.5
3,409,423	+		BPHYT_RS14995	0.44	-1.5
3,409,790	+		BPHYT_RS14995	0.56	-1.1
3,409,791	-		BPHYT_RS14995	0.56	-1.1
3,409,791	-		BPHYT_RS14995	0.56	-0.9
3,409,820	+		BPHYT_RS14995	0.57	-0.2
3,410,129	+		BPHYT_RS14995	0.68	-0.8
3,410,130	-		BPHYT_RS14995	0.68	+0.5
3,410,130	-		BPHYT_RS14995	0.68	+2.6
3,410,246	+		BPHYT_RS14995	0.72	+0.4
3,410,247	-		BPHYT_RS14995	0.72	+0.3
3,410,247	-		BPHYT_RS14995	0.72	-0.6
3,410,247	-		BPHYT_RS14995	0.72	-0.2
3,410,247	-		BPHYT_RS14995	0.72	+0.1
3,410,293	+		BPHYT_RS14995	0.73	-2.3
3,410,294	-		BPHYT_RS14995	0.73	-0.2
3,410,414	+		BPHYT_RS14995	0.77	+3.4
3,410,675	+		BPHYT_RS14995	0.86	-0.6
3,410,914	+				+0.2
3,410,967	+				+0.1
3,410,968	-				+0.4
3,410,968	-				-1.6
3,411,338	-				-0.1
3,411,650	+				-0.4
3,411,651	-				+0.2
3,411,651	-				+0.2
3,411,671	+				-0.9
3,411,671	+				+0.4
3,411,672	-				-0.4
3,411,672	-				-0.4
3,411,672	-				+0.2
3,411,696	-				-0.4
3,411,696	-				+0.3