Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14955

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,400,315	-				-0.7
3,400,318	+				-1.4
3,400,318	+				-1.3
3,400,318	+				+0.5
3,400,319	-				-1.6
3,400,319	-				+0.0
3,400,319	-				-0.2
3,400,322	+				+0.0
3,400,322	+				+1.7
3,400,322	+				-0.4
3,400,322	+				+0.8
3,400,323	-				-0.0
3,400,323	-				-0.4
3,400,346	+				-0.5
3,400,357	+				-0.7
3,400,357	+				-0.7
3,400,357	+				+4.4
3,400,357	+				+0.7
3,400,357	+				+0.2
3,400,360	+				-0.7
3,400,361	-				+0.0
3,400,615	+		BPHYT_RS14950	0.64	-0.2
3,400,643	+		BPHYT_RS14950	0.72	-0.1
3,400,644	-		BPHYT_RS14950	0.73	+0.4
3,400,658	+		BPHYT_RS14950	0.77	+1.2
3,400,668	-		BPHYT_RS14950	0.80	-1.0
3,400,668	-		BPHYT_RS14950	0.80	+0.9
3,400,798	+				+0.2
3,400,863	+				-0.6
3,400,863	+				+0.1
3,400,863	+				+0.6
3,400,864	-				-1.2
3,400,864	-				-2.0
3,400,864	-				-1.4
3,400,959	-				+0.6
3,400,959	-				-0.6
3,400,961	+				+0.0
3,400,976	-				+1.0
3,401,057	+				-0.8
3,401,058	-				-0.0
3,401,194	+				-2.8
3,401,298	+				-0.4
3,401,298	+				+0.0
3,401,298	+				+0.8
3,401,299	-				+1.3
3,401,299	-				-0.6
3,401,300	+				+0.3
3,401,300	+				-0.6
3,401,300	+				-0.8
3,401,301	-				+0.2
3,401,301	-				+0.1
3,401,301	-				-0.8
3,401,301	-				+1.4
3,401,351	+		BPHYT_RS14955	0.26	-1.4
3,401,352	-		BPHYT_RS14955	0.27	+0.3
3,401,402	+		BPHYT_RS14955	0.54	+0.4
3,401,403	-		BPHYT_RS14955	0.55	+1.6
3,401,403	-		BPHYT_RS14955	0.55	-0.1
3,401,413	-		BPHYT_RS14955	0.60	-0.4
3,401,457	-		BPHYT_RS14955	0.84	-0.3
3,401,504	+				-0.6
3,401,583	-				+0.1
3,401,607	+		BPHYT_RS14960	0.14	+1.5
3,401,607	+		BPHYT_RS14960	0.14	-0.1
3,401,608	-		BPHYT_RS14960	0.14	-0.5
3,401,610	+		BPHYT_RS14960	0.14	+0.6
3,401,610	+		BPHYT_RS14960	0.14	+0.6
3,401,610	+		BPHYT_RS14960	0.14	+1.0
3,401,610	+		BPHYT_RS14960	0.14	-1.2
3,401,657	-		BPHYT_RS14960	0.23	+0.5
3,401,779	-		BPHYT_RS14960	0.45	-1.6
3,401,894	-		BPHYT_RS14960	0.66	+0.1
3,401,944	+		BPHYT_RS14960	0.75	+0.7
3,401,945	-		BPHYT_RS14960	0.75	-0.7
3,402,038	-				-1.4
3,402,038	-				+0.1
3,402,087	-				-0.8
3,402,108	-				+0.6
3,402,117	+				-1.2
3,402,118	-				+0.4
3,402,162	+		BPHYT_RS14965	0.12	+1.1
3,402,206	-		BPHYT_RS14965	0.19	-0.2
3,402,220	+		BPHYT_RS14965	0.21	+1.4
3,402,325	-		BPHYT_RS14965	0.38	+0.8
3,402,325	-		BPHYT_RS14965	0.38	-0.5
3,402,325	-		BPHYT_RS14965	0.38	-0.2
3,402,435	+		BPHYT_RS14965	0.56	+0.3