Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14525

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,310,515	-		BPHYT_RS14520	0.25	-1.5
3,310,635	+		BPHYT_RS14520	0.37	-0.4
3,310,636	-		BPHYT_RS14520	0.37	-1.0
3,310,636	-		BPHYT_RS14520	0.37	+0.5
3,310,643	+		BPHYT_RS14520	0.38	-1.8
3,310,644	-		BPHYT_RS14520	0.38	+0.4
3,310,688	+		BPHYT_RS14520	0.42	-0.4
3,310,689	-		BPHYT_RS14520	0.43	+0.7
3,310,689	-		BPHYT_RS14520	0.43	-1.3
3,310,692	+		BPHYT_RS14520	0.43	+0.5
3,310,692	+		BPHYT_RS14520	0.43	-0.7
3,310,693	-		BPHYT_RS14520	0.43	+1.2
3,310,693	-		BPHYT_RS14520	0.43	-1.4
3,310,747	-		BPHYT_RS14520	0.48	-0.9
3,310,747	-		BPHYT_RS14520	0.48	-1.0
3,310,747	-		BPHYT_RS14520	0.48	-0.3
3,310,860	+		BPHYT_RS14520	0.60	-0.0
3,310,860	+		BPHYT_RS14520	0.60	-1.4
3,310,860	+		BPHYT_RS14520	0.60	+0.9
3,310,861	-		BPHYT_RS14520	0.60	-0.2
3,311,034	+		BPHYT_RS14520	0.77	-0.4
3,311,035	-		BPHYT_RS14520	0.77	-0.4
3,311,048	-		BPHYT_RS14520	0.79	+0.1
3,311,197	-				+1.1
3,311,197	-				-0.0
3,311,271	-				+0.3
3,311,364	-				+0.6
3,311,442	-		BPHYT_RS14525	0.10	-0.8
3,311,442	-		BPHYT_RS14525	0.10	+0.7
3,311,442	-		BPHYT_RS14525	0.10	-0.0
3,311,442	-		BPHYT_RS14525	0.10	+0.3
3,311,442	-		BPHYT_RS14525	0.10	+0.8
3,311,442	-		BPHYT_RS14525	0.10	+1.7
3,311,552	+		BPHYT_RS14525	0.18	-0.8
3,311,552	+		BPHYT_RS14525	0.18	-0.4
3,311,552	+		BPHYT_RS14525	0.18	-2.1
3,311,553	-		BPHYT_RS14525	0.18	-1.6
3,311,603	+		BPHYT_RS14525	0.21	-1.6
3,311,793	+		BPHYT_RS14525	0.35	-0.8
3,311,794	-		BPHYT_RS14525	0.35	-0.5
3,312,050	+		BPHYT_RS14525	0.52	-0.8
3,312,051	-		BPHYT_RS14525	0.53	-1.3
3,312,051	-		BPHYT_RS14525	0.53	+0.9
3,312,051	-		BPHYT_RS14525	0.53	-0.9
3,312,204	+		BPHYT_RS14525	0.63	+0.4
3,312,217	+		BPHYT_RS14525	0.64	-0.4
3,312,218	-		BPHYT_RS14525	0.64	+0.6
3,312,218	-		BPHYT_RS14525	0.64	-0.7
3,312,425	-		BPHYT_RS14525	0.79	+1.4
3,312,428	+		BPHYT_RS14525	0.79	-0.1
3,312,428	+		BPHYT_RS14525	0.79	-0.7
3,312,429	-		BPHYT_RS14525	0.79	-1.5
3,312,479	+		BPHYT_RS14525	0.82	-0.5
3,312,480	-		BPHYT_RS14525	0.83	-0.6
3,312,574	+		BPHYT_RS14525	0.89	-1.8
3,312,574	+		BPHYT_RS14525	0.89	-0.7
3,312,730	-				-0.2
3,312,730	-				-0.6
3,312,748	-				+0.1
3,313,033	+		BPHYT_RS14530	0.35	-0.8
3,313,034	-		BPHYT_RS14530	0.35	+1.3
3,313,034	-		BPHYT_RS14530	0.35	+0.4
3,313,060	-		BPHYT_RS14530	0.39	+1.6
3,313,107	+		BPHYT_RS14530	0.46	-0.1
3,313,222	+		BPHYT_RS14530	0.63	-0.4
3,313,363	+		BPHYT_RS14530	0.84	-0.6
3,313,493	+				+0.2
3,313,494	-				-1.5
3,313,494	-				+0.6
3,313,494	-				-0.7
3,313,498	+				-1.4
3,313,510	+				-1.8
3,313,510	+				+0.6
3,313,511	-				+0.4
3,313,511	-				+0.0
3,313,512	+				-1.6
3,313,512	+				+0.2
3,313,553	-				-0.3
3,313,578	+				-0.0
3,313,578	+				+0.3
3,313,579	-				+1.0
3,313,584	-				-0.1
3,313,661	-				+0.4
3,313,669	+				+0.2
3,313,670	-				-1.1
3,313,670	-				-1.3