Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10390

Experiment: 36hr PHYTO4 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS10385 and BPHYT_RS10390 are separated by 603 nucleotidesBPHYT_RS10390 and BPHYT_RS10395 are separated by 18 nucleotidesBPHYT_RS10395 and BPHYT_RS10400 are separated by 45 nucleotides BPHYT_RS10385: BPHYT_RS10385 - selenium-binding protein, at 2,359,514 to 2,360,920 _RS10385 BPHYT_RS10390: BPHYT_RS10390 - nitrate ABC transporter substrate-binding protein, at 2,361,524 to 2,362,591 _RS10390 BPHYT_RS10395: BPHYT_RS10395 - sulfonate ABC transporter, at 2,362,610 to 2,363,470 _RS10395 BPHYT_RS10400: BPHYT_RS10400 - taurine ABC transporter permease, at 2,363,516 to 2,364,388 _RS10400 Position (kb) 2361 2362 2363Strain fitness (log2 ratio) -2 -1 0 1at 2360.966 kb on + strandat 2361.162 kb on + strandat 2362.122 kb on - strand, within BPHYT_RS10390at 2362.430 kb on + strand, within BPHYT_RS10390at 2362.873 kb on + strand, within BPHYT_RS10395at 2362.873 kb on + strand, within BPHYT_RS10395at 2363.489 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
remove
2,360,966 + +1.5
2,361,162 + +0.2
2,362,122 - BPHYT_RS10390 0.56 -1.3
2,362,430 + BPHYT_RS10390 0.85 -0.9
2,362,873 + BPHYT_RS10395 0.31 -2.6
2,362,873 + BPHYT_RS10395 0.31 +1.5
2,363,489 + +1.6

Or see this region's nucleotide sequence