Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10200
Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO4 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,322,412 | + | BPHYT_RS10195 | 0.79 | -0.2 | |
2,322,451 | + | BPHYT_RS10195 | 0.82 | -0.8 | |
2,322,568 | + | +1.5 | |||
2,322,597 | - | +0.3 | |||
2,322,617 | + | -1.0 | |||
2,322,857 | - | +0.6 | |||
2,322,930 | - | +0.4 | |||
2,322,954 | - | -0.4 | |||
2,323,118 | + | -0.3 | |||
2,323,119 | - | -0.5 | |||
2,323,736 | + | +0.7 | |||
2,324,398 | + | BPHYT_RS10205 | 0.46 | -0.1 |
Or see this region's nucleotide sequence