Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08020

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
1,828,349	-		BPHYT_RS08015	0.15	+0.3
1,828,349	-		BPHYT_RS08015	0.15	+0.7
1,828,384	-		BPHYT_RS08015	0.20	+0.4
1,828,384	-		BPHYT_RS08015	0.20	+0.6
1,828,577	+		BPHYT_RS08015	0.48	+0.7
1,828,578	-		BPHYT_RS08015	0.49	-0.2
1,828,586	+		BPHYT_RS08015	0.50	+0.6
1,828,586	+		BPHYT_RS08015	0.50	-0.8
1,828,586	+		BPHYT_RS08015	0.50	-0.0
1,828,677	-		BPHYT_RS08015	0.63	+0.8
1,828,677	-		BPHYT_RS08015	0.63	+1.2
1,828,746	-		BPHYT_RS08015	0.73	+0.2
1,828,971	+				-1.7
1,828,972	-				-3.4
1,828,985	+				+0.0
1,828,985	+				-0.6
1,828,986	-				-0.2
1,828,986	-				+0.2
1,828,986	-				+0.6
1,829,126	+				-0.8
1,829,126	+				+0.5
1,829,126	+				+2.4
1,829,127	-				-0.1
1,829,161	+				+0.2
1,829,162	-				+0.3
1,829,198	+				+2.4
1,829,209	+				+0.2
1,829,244	+				-0.3
1,829,245	-				-0.1
1,829,307	-		BPHYT_RS08020	0.22	-1.0
1,829,307	-		BPHYT_RS08020	0.22	-3.4
1,829,503	-		BPHYT_RS08020	0.83	-1.4
1,829,637	+				-1.7
1,829,637	+				+1.6
1,829,640	+				-1.2
1,829,640	+				+0.3
1,829,641	-				-1.0
1,829,747	+				+1.5
1,829,748	-				+0.8
1,829,764	-				-0.2
1,829,764	-				-0.1
1,829,859	-				-0.1
1,829,859	-				-0.5
1,829,859	-				+0.7
1,829,918	+		BPHYT_RS08025	0.17	-0.3
1,829,922	+		BPHYT_RS08025	0.19	+0.4
1,829,922	+		BPHYT_RS08025	0.19	+0.6
1,829,922	+		BPHYT_RS08025	0.19	-1.3
1,829,922	+		BPHYT_RS08025	0.19	+0.6
1,829,923	-		BPHYT_RS08025	0.19	-1.0
1,829,923	-		BPHYT_RS08025	0.19	-0.5
1,829,923	-		BPHYT_RS08025	0.19	+0.7
1,830,170	-				+0.7
1,830,175	+				-0.2
1,830,175	+				-0.6
1,830,175	+				-0.2
1,830,175	+				+0.8
1,830,176	-				-1.3
1,830,176	-				+1.4
1,830,176	-				-0.8
1,830,176	-				-0.4
1,830,181	-				+0.8
1,830,181	-				-2.1
1,830,206	-				+0.1
1,830,209	+				-0.8
1,830,210	-				+1.1
1,830,212	+				-0.5
1,830,213	-				-0.3
1,830,216	-				-0.2
1,830,216	-				+0.5
1,830,374	+				+0.3
1,830,376	-				+0.0
1,830,376	-				-0.4