Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04210

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04205 and BPHYT_RS04210 are separated by 289 nucleotidesBPHYT_RS04210 and BPHYT_RS04215 are separated by 255 nucleotides BPHYT_RS04205: BPHYT_RS04205 - kinase, at 964,746 to 965,606 _RS04205 BPHYT_RS04210: BPHYT_RS04210 - rubredoxin, at 965,896 to 966,066 _RS04210 BPHYT_RS04215: BPHYT_RS04215 - hypothetical protein, at 966,322 to 967,734 _RS04215 Position (kb) 965 966 967Strain fitness (log2 ratio) -3 -2 -1 0 1at 964.964 kb on + strand, within BPHYT_RS04205at 964.964 kb on + strand, within BPHYT_RS04205at 965.042 kb on + strand, within BPHYT_RS04205at 965.042 kb on + strand, within BPHYT_RS04205at 965.042 kb on + strand, within BPHYT_RS04205at 965.083 kb on + strand, within BPHYT_RS04205at 965.663 kb on + strandat 965.663 kb on + strandat 965.664 kb on - strandat 965.805 kb on - strandat 965.879 kb on + strandat 966.228 kb on + strandat 966.228 kb on + strandat 966.229 kb on - strandat 966.947 kb on - strand, within BPHYT_RS04215

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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964,964 + BPHYT_RS04205 0.25 -1.2
964,964 + BPHYT_RS04205 0.25 -1.8
965,042 + BPHYT_RS04205 0.34 -0.5
965,042 + BPHYT_RS04205 0.34 -3.0
965,042 + BPHYT_RS04205 0.34 -0.7
965,083 + BPHYT_RS04205 0.39 -0.2
965,663 + +0.4
965,663 + +0.0
965,664 - -0.3
965,805 - +1.2
965,879 + +0.0
966,228 + +0.3
966,228 + -0.2
966,229 - -0.8
966,947 - BPHYT_RS04215 0.44 -1.3

Or see this region's nucleotide sequence