Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03435 and BPHYT_RS03440 are separated by 68 nucleotides BPHYT_RS03440 and BPHYT_RS03445 are separated by 8 nucleotides BPHYT_RS03445 and BPHYT_RS03450 are separated by 409 nucleotides
BPHYT_RS03435: BPHYT_RS03435 - polyisoprenoid-binding protein, at 775,621 to 776,190
_RS03435
BPHYT_RS03440: BPHYT_RS03440 - polyisoprenoid-binding protein, at 776,259 to 776,822
_RS03440
BPHYT_RS03445: BPHYT_RS03445 - cytochrome B561, at 776,831 to 777,391
_RS03445
BPHYT_RS03450: BPHYT_RS03450 - paraquat-inducible protein A, at 777,801 to 778,586
_RS03450
Position (kb) 776
777
778 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 775.869 kb on + strand, within BPHYT_RS03435 at 775.881 kb on + strand, within BPHYT_RS03435 at 775.882 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 776.100 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435 at 776.570 kb on - strand, within BPHYT_RS03440 at 776.570 kb on - strand, within BPHYT_RS03440 at 776.591 kb on - strand, within BPHYT_RS03440 at 776.591 kb on - strand, within BPHYT_RS03440 at 776.801 kb on - strand at 776.806 kb on + strand at 776.934 kb on + strand, within BPHYT_RS03445 at 777.022 kb on - strand, within BPHYT_RS03445 at 777.022 kb on - strand, within BPHYT_RS03445 at 777.051 kb on + strand, within BPHYT_RS03445 at 777.051 kb on + strand, within BPHYT_RS03445 at 777.057 kb on + strand, within BPHYT_RS03445 at 777.090 kb on + strand, within BPHYT_RS03445 at 777.090 kb on + strand, within BPHYT_RS03445 at 777.241 kb on - strand, within BPHYT_RS03445 at 777.346 kb on + strand at 777.346 kb on + strand at 777.346 kb on + strand at 777.355 kb on - strand at 777.355 kb on - strand at 777.409 kb on + strand at 777.410 kb on - strand at 777.410 kb on - strand at 777.474 kb on + strand at 777.474 kb on + strand at 777.478 kb on - strand at 777.478 kb on - strand at 777.501 kb on + strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.521 kb on - strand at 777.545 kb on + strand at 777.642 kb on + strand at 777.642 kb on + strand at 777.642 kb on + strand at 777.643 kb on - strand at 777.725 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.728 kb on + strand at 777.729 kb on - strand at 777.729 kb on - strand at 777.729 kb on - strand at 777.739 kb on + strand at 777.753 kb on + strand at 777.754 kb on - strand at 777.754 kb on - strand at 777.839 kb on + strand at 777.909 kb on + strand, within BPHYT_RS03450 at 777.910 kb on - strand, within BPHYT_RS03450 at 777.911 kb on + strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.147 kb on - strand, within BPHYT_RS03450 at 778.174 kb on - strand, within BPHYT_RS03450 at 778.247 kb on + strand, within BPHYT_RS03450 at 778.248 kb on - strand, within BPHYT_RS03450 at 778.273 kb on + strand, within BPHYT_RS03450 at 778.274 kb on - strand, within BPHYT_RS03450
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 775,869 + BPHYT_RS03435 0.44 +0.4 775,881 + BPHYT_RS03435 0.46 -1.9 775,882 - BPHYT_RS03435 0.46 -1.2 775,884 - BPHYT_RS03435 0.46 -2.2 775,884 - BPHYT_RS03435 0.46 -0.2 775,884 - BPHYT_RS03435 0.46 -0.0 775,884 - BPHYT_RS03435 0.46 +1.8 775,884 - BPHYT_RS03435 0.46 +0.8 775,884 - BPHYT_RS03435 0.46 -0.9 775,884 - BPHYT_RS03435 0.46 +1.1 776,100 - BPHYT_RS03435 0.84 -1.6 776,124 - BPHYT_RS03435 0.88 -0.3 776,124 - BPHYT_RS03435 0.88 +0.8 776,124 - BPHYT_RS03435 0.88 -1.5 776,570 - BPHYT_RS03440 0.55 +0.2 776,570 - BPHYT_RS03440 0.55 -1.4 776,591 - BPHYT_RS03440 0.59 -0.1 776,591 - BPHYT_RS03440 0.59 -0.6 776,801 - +0.8 776,806 + -1.0 776,934 + BPHYT_RS03445 0.18 +0.0 777,022 - BPHYT_RS03445 0.34 -1.1 777,022 - BPHYT_RS03445 0.34 +0.9 777,051 + BPHYT_RS03445 0.39 -0.1 777,051 + BPHYT_RS03445 0.39 -0.4 777,057 + BPHYT_RS03445 0.40 +0.1 777,090 + BPHYT_RS03445 0.46 -0.1 777,090 + BPHYT_RS03445 0.46 -0.5 777,241 - BPHYT_RS03445 0.73 -0.5 777,346 + -0.6 777,346 + +0.9 777,346 + -1.2 777,355 - +1.3 777,355 - +0.4 777,409 + +0.4 777,410 - +0.9 777,410 - -0.1 777,474 + -0.7 777,474 + -0.4 777,478 - -0.7 777,478 - -0.6 777,501 + +1.7 777,521 - +0.1 777,521 - +0.1 777,521 - +0.1 777,521 - +0.5 777,545 + +0.1 777,642 + -0.1 777,642 + +0.3 777,642 + +0.2 777,643 - -1.0 777,725 + -0.5 777,728 + +1.3 777,728 + +1.8 777,728 + +0.2 777,728 + -1.9 777,729 - +1.3 777,729 - +1.3 777,729 - +2.0 777,739 + -0.3 777,753 + -0.6 777,754 - +0.1 777,754 - +0.6 777,839 + +0.8 777,909 + BPHYT_RS03450 0.14 +3.2 777,910 - BPHYT_RS03450 0.14 +0.6 777,911 + BPHYT_RS03450 0.14 +2.1 778,147 - BPHYT_RS03450 0.44 +1.5 778,147 - BPHYT_RS03450 0.44 +1.3 778,147 - BPHYT_RS03450 0.44 +1.2 778,147 - BPHYT_RS03450 0.44 +0.4 778,174 - BPHYT_RS03450 0.47 +0.4 778,247 + BPHYT_RS03450 0.57 +0.6 778,248 - BPHYT_RS03450 0.57 +1.4 778,273 + BPHYT_RS03450 0.60 -2.0 778,274 - BPHYT_RS03450 0.60 -1.1
Or see this region's nucleotide sequence