Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02340 and BPHYT_RS02345 are separated by 49 nucleotides BPHYT_RS02345 and BPHYT_RS02350 are separated by 97 nucleotides
BPHYT_RS02340: BPHYT_RS02340 - branched-chain amino acid ABC transporter substrate-binding protein, at 536,508 to 537,743
_RS02340
BPHYT_RS02345: BPHYT_RS02345 - enoyl-CoA hydratase, at 537,793 to 538,680
_RS02345
BPHYT_RS02350: BPHYT_RS02350 - hypothetical protein, at 538,778 to 539,599
_RS02350
Position (kb) 537
538
539 Strain fitness (log2 ratio) -1
0
1
2 at 536.801 kb on + strand, within BPHYT_RS02340 at 536.802 kb on - strand, within BPHYT_RS02340 at 536.903 kb on - strand, within BPHYT_RS02340 at 537.105 kb on + strand, within BPHYT_RS02340 at 537.105 kb on + strand, within BPHYT_RS02340 at 537.203 kb on + strand, within BPHYT_RS02340 at 537.203 kb on + strand, within BPHYT_RS02340 at 537.294 kb on + strand, within BPHYT_RS02340 at 537.295 kb on - strand, within BPHYT_RS02340 at 537.309 kb on + strand, within BPHYT_RS02340 at 537.310 kb on - strand, within BPHYT_RS02340 at 537.450 kb on + strand, within BPHYT_RS02340 at 537.507 kb on + strand, within BPHYT_RS02340 at 537.508 kb on - strand, within BPHYT_RS02340 at 537.730 kb on - strand at 537.776 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.779 kb on - strand at 537.779 kb on - strand at 537.779 kb on - strand at 537.779 kb on - strand at 537.827 kb on - strand at 538.324 kb on + strand, within BPHYT_RS02345 at 538.324 kb on + strand, within BPHYT_RS02345 at 538.324 kb on + strand, within BPHYT_RS02345 at 538.324 kb on + strand, within BPHYT_RS02345 at 538.325 kb on - strand, within BPHYT_RS02345 at 538.325 kb on - strand, within BPHYT_RS02345 at 538.325 kb on - strand, within BPHYT_RS02345 at 538.327 kb on + strand, within BPHYT_RS02345 at 538.327 kb on + strand at 538.328 kb on - strand, within BPHYT_RS02345 at 538.698 kb on + strand at 538.699 kb on - strand at 538.758 kb on + strand at 539.597 kb on + strand at 539.597 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 536,801 + BPHYT_RS02340 0.24 +0.4 536,802 - BPHYT_RS02340 0.24 -0.5 536,903 - BPHYT_RS02340 0.32 +1.9 537,105 + BPHYT_RS02340 0.48 +0.0 537,105 + BPHYT_RS02340 0.48 -1.4 537,203 + BPHYT_RS02340 0.56 +0.2 537,203 + BPHYT_RS02340 0.56 -0.3 537,294 + BPHYT_RS02340 0.64 +1.1 537,295 - BPHYT_RS02340 0.64 +1.2 537,309 + BPHYT_RS02340 0.65 -0.4 537,310 - BPHYT_RS02340 0.65 +0.4 537,450 + BPHYT_RS02340 0.76 -0.2 537,507 + BPHYT_RS02340 0.81 -0.0 537,508 - BPHYT_RS02340 0.81 +1.5 537,730 - -1.2 537,776 + +0.4 537,778 + +0.0 537,778 + +0.5 537,778 + +0.8 537,778 + +0.3 537,778 + +1.4 537,779 - +1.2 537,779 - -1.3 537,779 - -0.5 537,779 - -0.1 537,827 - -1.0 538,324 + BPHYT_RS02345 0.60 +0.2 538,324 + BPHYT_RS02345 0.60 +1.9 538,324 + BPHYT_RS02345 0.60 +0.6 538,324 + BPHYT_RS02345 0.60 -0.5 538,325 - BPHYT_RS02345 0.60 -0.7 538,325 - BPHYT_RS02345 0.60 -0.2 538,325 - BPHYT_RS02345 0.60 -0.2 538,327 + BPHYT_RS02345 0.60 +0.8 538,327 + +1.5 538,328 - BPHYT_RS02345 0.60 +1.1 538,698 + -0.5 538,699 - -0.4 538,758 + -0.1 539,597 + -0.3 539,597 + -1.7
Or see this region's nucleotide sequence