Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01235 and BPHYT_RS01240 are separated by 196 nucleotides BPHYT_RS01240 and BPHYT_RS01245 are separated by 95 nucleotides BPHYT_RS01245 and BPHYT_RS01250 are separated by 54 nucleotides
BPHYT_RS01235: BPHYT_RS01235 - hypothetical protein, at 284,769 to 285,008
_RS01235
BPHYT_RS01240: BPHYT_RS01240 - hypothetical protein, at 285,205 to 285,423
_RS01240
BPHYT_RS01245: BPHYT_RS01245 - hypothetical protein, at 285,519 to 286,262
_RS01245
BPHYT_RS01250: BPHYT_RS01250 - integrase, at 286,317 to 287,315
_RS01250
Position (kb) 285
286
287 Strain fitness (log2 ratio) -1
0
1
2
3 at 284.808 kb on + strand, within BPHYT_RS01235 at 284.809 kb on - strand, within BPHYT_RS01235 at 285.304 kb on - strand, within BPHYT_RS01240 at 285.381 kb on - strand, within BPHYT_RS01240 at 285.427 kb on - strand at 285.527 kb on + strand at 285.591 kb on + strand at 285.693 kb on + strand, within BPHYT_RS01245 at 285.694 kb on - strand, within BPHYT_RS01245 at 285.951 kb on + strand, within BPHYT_RS01245 at 285.951 kb on + strand, within BPHYT_RS01245 at 285.952 kb on - strand, within BPHYT_RS01245 at 285.952 kb on - strand, within BPHYT_RS01245 at 286.058 kb on - strand, within BPHYT_RS01245 at 286.058 kb on - strand, within BPHYT_RS01245 at 286.171 kb on + strand, within BPHYT_RS01245 at 286.172 kb on - strand, within BPHYT_RS01245 at 286.260 kb on + strand at 286.516 kb on + strand, within BPHYT_RS01250 at 286.516 kb on + strand, within BPHYT_RS01250 at 286.522 kb on - strand, within BPHYT_RS01250 at 286.701 kb on + strand, within BPHYT_RS01250 at 286.702 kb on - strand, within BPHYT_RS01250 at 286.934 kb on + strand, within BPHYT_RS01250 at 286.935 kb on - strand, within BPHYT_RS01250 at 287.196 kb on - strand, within BPHYT_RS01250 at 287.228 kb on + strand at 287.228 kb on + strand at 287.229 kb on - strand at 287.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 284,808 + BPHYT_RS01235 0.16 -0.4 284,809 - BPHYT_RS01235 0.17 -0.4 285,304 - BPHYT_RS01240 0.45 -1.4 285,381 - BPHYT_RS01240 0.80 -1.3 285,427 - -0.8 285,527 + -0.4 285,591 + +0.0 285,693 + BPHYT_RS01245 0.23 -0.1 285,694 - BPHYT_RS01245 0.24 +2.8 285,951 + BPHYT_RS01245 0.58 -0.6 285,951 + BPHYT_RS01245 0.58 -0.4 285,952 - BPHYT_RS01245 0.58 +0.7 285,952 - BPHYT_RS01245 0.58 -0.4 286,058 - BPHYT_RS01245 0.72 -1.7 286,058 - BPHYT_RS01245 0.72 +1.5 286,171 + BPHYT_RS01245 0.88 -1.4 286,172 - BPHYT_RS01245 0.88 -0.0 286,260 + +0.2 286,516 + BPHYT_RS01250 0.20 +0.5 286,516 + BPHYT_RS01250 0.20 -0.8 286,522 - BPHYT_RS01250 0.21 +0.6 286,701 + BPHYT_RS01250 0.38 +0.3 286,702 - BPHYT_RS01250 0.39 +0.1 286,934 + BPHYT_RS01250 0.62 -0.0 286,935 - BPHYT_RS01250 0.62 +0.4 287,196 - BPHYT_RS01250 0.88 +0.4 287,228 + +0.3 287,228 + +1.1 287,229 - -0.3 287,229 - +0.2
Or see this region's nucleotide sequence