Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00370

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00365 and BPHYT_RS00370 are separated by 26 nucleotidesBPHYT_RS00370 and BPHYT_RS00375 overlap by 4 nucleotides BPHYT_RS00365: BPHYT_RS00365 - ABC transporter substrate-binding protein, at 92,781 to 93,749 _RS00365 BPHYT_RS00370: BPHYT_RS00370 - ABC transporter ATP-binding protein, at 93,776 to 94,582 _RS00370 BPHYT_RS00375: BPHYT_RS00375 - sugar ABC transporter, at 94,579 to 95,499 _RS00375 Position (kb) 93 94 95Strain fitness (log2 ratio) -2 -1 0 1 2at 93.105 kb on - strand, within BPHYT_RS00365at 93.424 kb on - strand, within BPHYT_RS00365at 93.493 kb on + strand, within BPHYT_RS00365at 93.549 kb on + strand, within BPHYT_RS00365at 93.660 kb on + strandat 93.661 kb on - strandat 93.910 kb on - strand, within BPHYT_RS00370at 93.968 kb on - strand, within BPHYT_RS00370at 93.968 kb on - strand, within BPHYT_RS00370at 94.009 kb on + strand, within BPHYT_RS00370at 94.041 kb on - strand, within BPHYT_RS00370at 94.442 kb on + strand, within BPHYT_RS00370at 94.681 kb on - strand, within BPHYT_RS00375at 94.874 kb on + strand, within BPHYT_RS00375at 95.133 kb on + strand, within BPHYT_RS00375at 95.221 kb on - strand, within BPHYT_RS00375at 95.397 kb on + strand, within BPHYT_RS00375at 95.398 kb on - strand, within BPHYT_RS00375at 95.405 kb on + strand, within BPHYT_RS00375at 95.406 kb on - strand, within BPHYT_RS00375at 95.504 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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93,105 - BPHYT_RS00365 0.33 -1.6
93,424 - BPHYT_RS00365 0.66 -1.5
93,493 + BPHYT_RS00365 0.73 -1.0
93,549 + BPHYT_RS00365 0.79 -0.8
93,660 + -0.2
93,661 - -1.1
93,910 - BPHYT_RS00370 0.17 +1.7
93,968 - BPHYT_RS00370 0.24 +0.5
93,968 - BPHYT_RS00370 0.24 +1.0
94,009 + BPHYT_RS00370 0.29 +0.6
94,041 - BPHYT_RS00370 0.33 +0.8
94,442 + BPHYT_RS00370 0.83 -1.7
94,681 - BPHYT_RS00375 0.11 -0.1
94,874 + BPHYT_RS00375 0.32 +0.7
95,133 + BPHYT_RS00375 0.60 -1.6
95,221 - BPHYT_RS00375 0.70 +2.4
95,397 + BPHYT_RS00375 0.89 +0.2
95,398 - BPHYT_RS00375 0.89 -1.9
95,405 + BPHYT_RS00375 0.90 +1.4
95,406 - BPHYT_RS00375 0.90 -0.6
95,504 - +0.8

Or see this region's nucleotide sequence