Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36115 and BPHYT_RS36120 are separated by 82 nucleotides BPHYT_RS36120 and BPHYT_RS36125 are separated by 244 nucleotides BPHYT_RS36125 and BPHYT_RS36130 are separated by 44 nucleotides BPHYT_RS36130 and BPHYT_RS36135 are separated by 662 nucleotides
BPHYT_RS36115: BPHYT_RS36115 - hypothetical protein, at 43,394 to 43,693
_RS36115
BPHYT_RS36120: BPHYT_RS36120 - hypothetical protein, at 43,776 to 44,009
_RS36120
BPHYT_RS36125: BPHYT_RS36125 - hypothetical protein, at 44,254 to 44,436
_RS36125
BPHYT_RS36130: BPHYT_RS36130 - hypothetical protein, at 44,481 to 44,753
_RS36130
BPHYT_RS36135: BPHYT_RS36135 - hypothetical protein, at 45,416 to 45,631
_RS36135
Position (kb) 44
45 Strain fitness (log2 ratio) -1
0
1 at 44.113 kb on + strand at 44.191 kb on + strand at 44.191 kb on + strand at 44.192 kb on - strand at 44.214 kb on - strand at 44.214 kb on - strand at 44.419 kb on + strand at 44.641 kb on - strand, within BPHYT_RS36130 at 44.736 kb on + strand at 44.784 kb on + strand at 44.912 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 44,113 + -0.2 44,191 + +0.2 44,191 + +0.0 44,192 - +0.1 44,214 - +0.1 44,214 - +0.1 44,419 + -0.1 44,641 - BPHYT_RS36130 0.59 -1.6 44,736 + -0.0 44,784 + -0.3 44,912 - +0.9
Or see this region's nucleotide sequence