Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34205

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,275,417	-				+0.6
3,275,417	-				+0.2
3,275,417	-				+0.8
3,275,549	+		BPHYT_RS34195	0.14	-1.0
3,275,550	-		BPHYT_RS34195	0.14	-0.3
3,275,656	+		BPHYT_RS34195	0.39	-0.4
3,275,657	-		BPHYT_RS34195	0.39	-1.4
3,275,657	-		BPHYT_RS34195	0.39	-0.7
3,275,657	-		BPHYT_RS34195	0.39	+1.2
3,275,725	+		BPHYT_RS34195	0.54	+0.6
3,275,726	-		BPHYT_RS34195	0.55	-0.4
3,275,788	+		BPHYT_RS34195	0.69	-1.1
3,275,827	+		BPHYT_RS34195	0.78	-0.3
3,275,827	+		BPHYT_RS34195	0.78	-0.8
3,275,828	-		BPHYT_RS34195	0.78	-1.1
3,276,183	+		BPHYT_RS34200	0.46	+3.6
3,276,286	+		BPHYT_RS34200	0.80	-2.1
3,276,286	+		BPHYT_RS34200	0.80	-0.6
3,276,287	-		BPHYT_RS34200	0.81	-1.8
3,276,287	-		BPHYT_RS34200	0.81	-0.1
3,276,289	+		BPHYT_RS34200	0.81	-0.6
3,276,290	-		BPHYT_RS34200	0.82	+0.8
3,276,290	-		BPHYT_RS34200	0.82	-1.0
3,276,290	-		BPHYT_RS34200	0.82	-0.9
3,276,290	-		BPHYT_RS34200	0.82	+0.5
3,276,388	+				-1.1
3,276,388	+				-0.1
3,276,388	+				-0.9
3,276,389	-				-0.0
3,276,452	+				-0.6
3,276,452	+				+1.0
3,276,453	-				+0.1
3,276,453	-				+0.7
3,276,713	-		BPHYT_RS34205	0.23	-1.4
3,276,713	-		BPHYT_RS34205	0.23	+0.3
3,276,997	+		BPHYT_RS34205	0.44	-0.2
3,276,998	-		BPHYT_RS34205	0.44	-1.4
3,277,713	+				-1.7
3,277,775	-				-0.6
3,277,791	+				-0.9
3,277,792	-				-3.3
3,278,265	+		BPHYT_RS34210	0.47	+0.4
3,278,277	+		BPHYT_RS34210	0.49	+0.1
3,278,278	-		BPHYT_RS34210	0.49	-0.0
3,278,278	-		BPHYT_RS34210	0.49	-0.3
3,278,278	-		BPHYT_RS34210	0.49	-0.5
3,278,302	+		BPHYT_RS34210	0.51	+0.1
3,278,304	+		BPHYT_RS34210	0.52	+0.0
3,278,304	+		BPHYT_RS34210	0.52	-0.3
3,278,305	-		BPHYT_RS34210	0.52	-1.1
3,278,476	-		BPHYT_RS34210	0.72	+0.3