Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34140

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,262,606	+		BPHYT_RS34135	0.15	+0.3
3,262,639	+		BPHYT_RS34135	0.20	-2.4
3,262,639	+		BPHYT_RS34135	0.20	-0.1
3,262,639	+		BPHYT_RS34135	0.20	+0.2
3,262,660	-		BPHYT_RS34135	0.23	-0.4
3,262,669	+		BPHYT_RS34135	0.24	-0.9
3,262,669	+		BPHYT_RS34135	0.24	+0.8
3,262,896	-		BPHYT_RS34135	0.59	-1.6
3,263,125	+				-0.7
3,263,153	+				-1.8
3,263,281	+				-0.2
3,263,282	-				-1.3
3,263,303	+				-1.3
3,263,316	-				+1.0
3,263,343	+				-0.4
3,263,406	+				-1.5
3,263,407	-				-0.4
3,263,667	-		BPHYT_RS34140	0.19	+0.0
3,263,784	+		BPHYT_RS34140	0.27	-0.6
3,263,784	+		BPHYT_RS34140	0.27	-0.2
3,263,785	-		BPHYT_RS34140	0.28	+0.4
3,263,785	-		BPHYT_RS34140	0.28	+1.1
3,264,207	+		BPHYT_RS34140	0.56	+1.1
3,264,207	+		BPHYT_RS34140	0.56	-1.2
3,264,207	+		BPHYT_RS34140	0.56	-0.8
3,264,207	+		BPHYT_RS34140	0.56	-0.6
3,264,207	+		BPHYT_RS34140	0.56	-0.6
3,264,207	+		BPHYT_RS34140	0.56	-2.1
3,264,207	+		BPHYT_RS34140	0.56	-0.3
3,264,207	+		BPHYT_RS34140	0.56	-1.1
3,264,208	-		BPHYT_RS34140	0.56	+0.2
3,264,208	-				+1.0
3,264,208	-		BPHYT_RS34140	0.56	-0.4
3,264,262	-		BPHYT_RS34140	0.60	+0.4
3,264,262	-		BPHYT_RS34140	0.60	+0.9
3,264,270	+		BPHYT_RS34140	0.61	-0.7
3,264,270	+		BPHYT_RS34140	0.61	-0.8
3,264,270	+		BPHYT_RS34140	0.61	-0.9
3,264,304	-		BPHYT_RS34140	0.63	-0.7
3,264,413	+		BPHYT_RS34140	0.70	-0.2
3,264,414	-		BPHYT_RS34140	0.70	-0.3
3,264,535	-		BPHYT_RS34140	0.79	+0.1
3,264,573	+		BPHYT_RS34140	0.81	-2.8
3,264,574	-		BPHYT_RS34140	0.81	-2.0
3,264,574	-		BPHYT_RS34140	0.81	-1.6
3,264,896	+				+0.3
3,265,035	-		BPHYT_RS34145	0.23	-1.8
3,265,035	-		BPHYT_RS34145	0.23	-0.2
3,265,035	-		BPHYT_RS34145	0.23	-0.8
3,265,041	+		BPHYT_RS34145	0.24	+3.3
3,265,042	-		BPHYT_RS34145	0.24	+0.8
3,265,064	+		BPHYT_RS34145	0.29	-0.2
3,265,064	+		BPHYT_RS34145	0.29	+0.0
3,265,065	-		BPHYT_RS34145	0.29	-0.3
3,265,131	-		BPHYT_RS34145	0.45	-0.2
3,265,131	-		BPHYT_RS34145	0.45	-1.4
3,265,316	+		BPHYT_RS34145	0.87	+0.4
3,265,316	+		BPHYT_RS34145	0.87	-0.8
3,265,316	+		BPHYT_RS34145	0.87	-0.8
3,265,513	-				+0.4
3,265,675	+		BPHYT_RS34150	0.21	-1.6
3,265,675	+		BPHYT_RS34150	0.21	-0.4
3,265,676	-		BPHYT_RS34150	0.21	+0.6
3,265,708	-		BPHYT_RS34150	0.26	+0.7