Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33675

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,137,766	+				+0.5
3,137,767	-				+2.5
3,137,781	-				+1.1
3,137,781	-				+3.3
3,137,855	+				+0.2
3,137,855	+				-0.1
3,137,855	+				-0.5
3,137,856	-				+0.8
3,137,879	+				+0.8
3,137,986	+		BPHYT_RS33670	0.19	+0.3
3,138,055	+		BPHYT_RS33670	0.34	+0.4
3,138,055	+		BPHYT_RS33670	0.34	+0.5
3,138,055	+		BPHYT_RS33670	0.34	-1.3
3,138,055	+		BPHYT_RS33670	0.34	-0.1
3,138,055	+		BPHYT_RS33670	0.34	-0.3
3,138,055	+		BPHYT_RS33670	0.34	-0.5
3,138,056	-		BPHYT_RS33670	0.34	-0.5
3,138,056	-		BPHYT_RS33670	0.34	-0.8
3,138,056	-		BPHYT_RS33670	0.34	-1.0
3,138,056	-		BPHYT_RS33670	0.34	-0.4
3,138,122	+		BPHYT_RS33670	0.49	-0.1
3,138,123	-		BPHYT_RS33670	0.49	-0.7
3,138,123	-		BPHYT_RS33670	0.49	-0.1
3,138,123	-		BPHYT_RS33670	0.49	-1.2
3,138,212	+		BPHYT_RS33670	0.68	+0.1
3,138,213	-		BPHYT_RS33670	0.68	+0.3
3,138,278	+		BPHYT_RS33670	0.83	+0.7
3,138,289	+		BPHYT_RS33670	0.85	+0.2
3,138,289	+		BPHYT_RS33670	0.85	+0.5
3,138,290	-		BPHYT_RS33670	0.85	+0.3
3,138,444	+				-0.1
3,138,519	+				-0.8
3,138,520	-				+2.5
3,138,615	+				-0.0
3,138,616	-				-0.2
3,138,616	-				-0.4
3,138,939	+		BPHYT_RS33675	0.18	-1.0
3,139,181	+		BPHYT_RS33675	0.38	-0.5
3,139,181	+		BPHYT_RS33675	0.38	-1.6
3,139,196	-		BPHYT_RS33675	0.39	-0.5
3,139,317	+		BPHYT_RS33675	0.49	+0.1
3,139,318	-		BPHYT_RS33675	0.49	-1.0
3,139,318	-		BPHYT_RS33675	0.49	-0.0
3,139,318	-		BPHYT_RS33675	0.49	+0.0
3,139,318	-		BPHYT_RS33675	0.49	+0.1
3,139,417	-		BPHYT_RS33675	0.58	-0.4
3,139,599	+		BPHYT_RS33675	0.73	-0.1
3,139,599	+		BPHYT_RS33675	0.73	-0.2
3,139,599	+		BPHYT_RS33675	0.73	-1.5
3,139,599	+		BPHYT_RS33675	0.73	-1.4
3,139,599	+		BPHYT_RS33675	0.73	+0.3
3,139,599	+		BPHYT_RS33675	0.73	-1.5
3,139,599	+		BPHYT_RS33675	0.73	-1.2
3,139,599	+		BPHYT_RS33675	0.73	+1.5
3,139,599	+		BPHYT_RS33675	0.73	+0.1
3,139,599	+		BPHYT_RS33675	0.73	-0.2
3,139,600	-		BPHYT_RS33675	0.73	-0.3
3,139,600	-		BPHYT_RS33675	0.73	-1.8
3,139,600	-		BPHYT_RS33675	0.73	-0.8
3,139,600	-		BPHYT_RS33675	0.73	+0.9
3,139,600	-		BPHYT_RS33675	0.73	-1.3
3,139,600	-		BPHYT_RS33675	0.73	-1.9
3,139,600	-		BPHYT_RS33675	0.73	+1.2
3,139,608	+				+1.5
3,139,609	-		BPHYT_RS33675	0.74	+0.1
3,139,801	+		BPHYT_RS33675	0.90	+0.4
3,139,801	+		BPHYT_RS33675	0.90	-0.9
3,139,994	+				-0.2
3,139,995	-				+0.6
3,140,236	+				-0.1
3,140,237	-				+1.1
3,140,237	-				-0.3
3,140,247	-				-0.8
3,140,247	-				-0.2
3,140,247	-				+1.3
3,140,305	-				-0.5
3,140,305	-				-0.3
3,140,305	-				-1.3
3,140,309	+				-1.7
3,140,310	-				-0.7
3,140,310	-				-1.2
3,140,310	-				-0.5
3,140,314	+				-0.9
3,140,314	+				-0.5
3,140,315	-				-0.3
3,140,315	-				-1.8
3,140,468	+		BPHYT_RS33680	0.15	+0.2
3,140,625	-		BPHYT_RS33680	0.37	+0.1
3,140,764	+		BPHYT_RS33680	0.57	-0.8