Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33665

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,135,404	-		BPHYT_RS33655	0.64	+0.9
3,135,550	+				+2.5
3,135,551	-				-0.2
3,135,551	-				-0.7
3,135,551	-				-2.7
3,135,562	+				-0.2
3,135,588	+				-0.5
3,135,589	-				-0.1
3,135,751	+				+0.2
3,135,752	-				+0.1
3,136,181	-				+0.0
3,136,324	-				+0.5
3,136,324	-				-0.2
3,136,332	+				+1.2
3,136,333	-				+0.2
3,136,333	-				-0.8
3,136,333	-				-0.3
3,136,336	+				+0.6
3,136,336	+				+0.3
3,136,336	+				-0.7
3,136,337	-				+0.2
3,136,337	-				+0.3
3,136,437	-				+0.3
3,136,440	-				-1.0
3,136,474	-				-1.7
3,136,474	-				-2.0
3,136,602	+		BPHYT_RS33665	0.17	-1.6
3,136,603	-		BPHYT_RS33665	0.17	-0.1
3,136,603	-		BPHYT_RS33665	0.17	+0.2
3,136,634	+		BPHYT_RS33665	0.19	+0.7
3,136,923	-		BPHYT_RS33665	0.38	-0.3
3,137,084	+		BPHYT_RS33665	0.49	-1.3
3,137,084	+		BPHYT_RS33665	0.49	-0.8
3,137,126	+		BPHYT_RS33665	0.52	-1.9
3,137,127	-		BPHYT_RS33665	0.52	+0.2
3,137,127	-		BPHYT_RS33665	0.52	+0.1
3,137,258	+		BPHYT_RS33665	0.61	+0.6
3,137,318	+		BPHYT_RS33665	0.65	+0.2
3,137,438	+		BPHYT_RS33665	0.73	+1.1
3,137,438	+		BPHYT_RS33665	0.73	-0.9
3,137,440	+		BPHYT_RS33665	0.73	-0.2
3,137,441	-		BPHYT_RS33665	0.73	-0.2
3,137,441	-		BPHYT_RS33665	0.73	+0.2
3,137,441	-		BPHYT_RS33665	0.73	-1.7
3,137,519	+		BPHYT_RS33665	0.78	-0.8
3,137,519	+		BPHYT_RS33665	0.78	-1.4
3,137,609	+		BPHYT_RS33665	0.84	-1.1
3,137,609	+		BPHYT_RS33665	0.84	-0.6
3,137,678	+		BPHYT_RS33665	0.89	-0.5
3,137,766	+				+0.5
3,137,767	-				+2.5
3,137,781	-				+1.1
3,137,781	-				+3.3
3,137,855	+				+0.2
3,137,855	+				-0.1
3,137,855	+				-0.5
3,137,856	-				+0.8
3,137,879	+				+0.8
3,137,986	+		BPHYT_RS33670	0.19	+0.3
3,138,055	+		BPHYT_RS33670	0.34	+0.4
3,138,055	+		BPHYT_RS33670	0.34	+0.5
3,138,055	+		BPHYT_RS33670	0.34	-1.3
3,138,055	+		BPHYT_RS33670	0.34	-0.1
3,138,055	+		BPHYT_RS33670	0.34	-0.3
3,138,055	+		BPHYT_RS33670	0.34	-0.5
3,138,056	-		BPHYT_RS33670	0.34	-0.5
3,138,056	-		BPHYT_RS33670	0.34	-0.8
3,138,056	-		BPHYT_RS33670	0.34	-1.0
3,138,056	-		BPHYT_RS33670	0.34	-0.4
3,138,122	+		BPHYT_RS33670	0.49	-0.1
3,138,123	-		BPHYT_RS33670	0.49	-0.7
3,138,123	-		BPHYT_RS33670	0.49	-0.1
3,138,123	-		BPHYT_RS33670	0.49	-1.2
3,138,212	+		BPHYT_RS33670	0.68	+0.1
3,138,213	-		BPHYT_RS33670	0.68	+0.3
3,138,278	+		BPHYT_RS33670	0.83	+0.7
3,138,289	+		BPHYT_RS33670	0.85	+0.2
3,138,289	+		BPHYT_RS33670	0.85	+0.5
3,138,290	-		BPHYT_RS33670	0.85	+0.3
3,138,444	+				-0.1
3,138,519	+				-0.8
3,138,520	-				+2.5
3,138,615	+				-0.0
3,138,616	-				-0.2
3,138,616	-				-0.4