Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33475

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,095,770	-				+1.5
3,095,852	-		BPHYT_RS33470	0.32	-0.7
3,095,852	-		BPHYT_RS33470	0.32	+0.2
3,095,852	-		BPHYT_RS33470	0.32	-0.6
3,095,852	-		BPHYT_RS33470	0.32	-1.0
3,095,852	-		BPHYT_RS33470	0.32	-1.2
3,095,852	-				+0.1
3,095,852	-		BPHYT_RS33470	0.32	-1.1
3,095,854	+		BPHYT_RS33470	0.33	+0.3
3,095,854	+		BPHYT_RS33470	0.33	-0.7
3,095,872	-		BPHYT_RS33470	0.39	-0.3
3,095,932	+		BPHYT_RS33470	0.62	+1.0
3,096,036	+				-0.4
3,096,036	+				-0.1
3,096,037	-				-0.5
3,096,054	+				-0.3
3,096,054	+				-1.6
3,096,071	-				-1.2
3,096,103	+				-1.7
3,096,124	-				-1.1
3,096,124	-				+0.5
3,096,276	-				+0.8
3,096,291	-				-0.4
3,096,392	-				+0.5
3,096,453	+				+0.3
3,096,453	+				-0.8
3,096,683	+		BPHYT_RS33475	0.29	-1.2
3,096,684	-		BPHYT_RS33475	0.29	+0.1
3,096,685	+		BPHYT_RS33475	0.30	+0.6
3,096,686	-		BPHYT_RS33475	0.30	+0.4
3,096,686	-		BPHYT_RS33475	0.30	+0.5
3,096,713	+		BPHYT_RS33475	0.34	-0.7
3,096,713	+		BPHYT_RS33475	0.34	+0.4
3,096,743	+		BPHYT_RS33475	0.39	+0.7
3,096,743	+		BPHYT_RS33475	0.39	+1.3
3,096,744	-		BPHYT_RS33475	0.39	-0.5
3,096,744	-		BPHYT_RS33475	0.39	+0.6
3,096,744	-		BPHYT_RS33475	0.39	-1.0
3,096,887	+		BPHYT_RS33475	0.61	+0.0
3,096,890	+		BPHYT_RS33475	0.62	-0.9
3,096,891	-		BPHYT_RS33475	0.62	-1.5
3,096,941	+		BPHYT_RS33475	0.70	+0.8
3,096,941	+		BPHYT_RS33475	0.70	+0.0
3,096,941	+		BPHYT_RS33475	0.70	-0.8
3,096,941	+		BPHYT_RS33475	0.70	-2.3
3,096,941	+		BPHYT_RS33475	0.70	-0.1
3,096,942	-		BPHYT_RS33475	0.70	-1.7
3,096,986	+		BPHYT_RS33475	0.77	+0.7
3,096,987	-		BPHYT_RS33475	0.77	-2.7
3,096,987	-		BPHYT_RS33475	0.77	+1.5
3,097,034	+		BPHYT_RS33475	0.84	-0.3
3,097,263	+				+0.8
3,097,264	-				+1.0
3,097,927	+				-0.3
3,097,947	+				-0.4
3,097,948	-				+2.1
3,097,948	-				+0.1
3,097,948	-				-1.1
3,097,948	-				+0.5
3,097,957	+		BPHYT_RS33485	0.11	+0.6
3,097,957	+		BPHYT_RS33485	0.11	-1.1
3,097,958	-		BPHYT_RS33485	0.11	+0.8
3,097,967	-		BPHYT_RS33485	0.15	-1.2
3,097,967	-		BPHYT_RS33485	0.15	+2.5
3,098,072	-		BPHYT_RS33485	0.62	+0.5