Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33370

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33360 and BPHYT_RS33365 are separated by 105 nucleotidesBPHYT_RS33365 and BPHYT_RS33370 are separated by 80 nucleotidesBPHYT_RS33370 and BPHYT_RS33375 are separated by 353 nucleotides BPHYT_RS33360: BPHYT_RS33360 - formyl-CoA transferase, at 3,067,831 to 3,069,081 _RS33360 BPHYT_RS33365: BPHYT_RS33365 - PAS sensor protein, at 3,069,187 to 3,069,618 _RS33365 BPHYT_RS33370: BPHYT_RS33370 - LysR family transcriptional regulator, at 3,069,699 to 3,070,625 _RS33370 BPHYT_RS33375: BPHYT_RS33375 - membrane protein, at 3,070,979 to 3,072,196 _RS33375 Position (kb) 3069 3070 3071Strain fitness (log2 ratio) -1 0 1at 3069.089 kb on + strandat 3069.327 kb on + strand, within BPHYT_RS33365at 3069.450 kb on + strand, within BPHYT_RS33365at 3069.892 kb on - strand, within BPHYT_RS33370at 3070.371 kb on - strand, within BPHYT_RS33370at 3070.687 kb on - strandat 3070.711 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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3,069,089 + -1.0
3,069,327 + BPHYT_RS33365 0.32 -1.5
3,069,450 + BPHYT_RS33365 0.61 +0.4
3,069,892 - BPHYT_RS33370 0.21 -0.7
3,070,371 - BPHYT_RS33370 0.72 -1.1
3,070,687 - -0.7
3,070,711 + -0.2

Or see this region's nucleotide sequence