Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33015
Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO4 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,984,922 | - | BPHYT_RS33010 | 0.15 | +0.7 | |
2,984,978 | - | BPHYT_RS33010 | 0.27 | +0.6 | |
2,985,353 | - | +0.5 | |||
2,985,422 | + | -0.3 | |||
2,985,697 | + | BPHYT_RS33015 | 0.47 | +0.4 | |
2,986,236 | - | BPHYT_RS33020 | 0.35 | -0.2 | |
2,986,679 | + | +0.6 | |||
2,986,680 | - | +0.1 | |||
2,986,680 | - | -0.8 | |||
2,986,884 | + | -1.0 | |||
2,986,885 | - | +0.3 |
Or see this region's nucleotide sequence