Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33015

Experiment: 36hr PHYTO4 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS33005 and BPHYT_RS33010 are separated by 72 nucleotidesBPHYT_RS33010 and BPHYT_RS33015 are separated by 117 nucleotidesBPHYT_RS33015 and BPHYT_RS33020 are separated by 3 nucleotides BPHYT_RS33005: BPHYT_RS33005 - AraC family transcriptional regulator, at 2,983,798 to 2,984,772 _RS33005 BPHYT_RS33010: BPHYT_RS33010 - hypothetical protein, at 2,984,845 to 2,985,345 _RS33010 BPHYT_RS33015: BPHYT_RS33015 - hypothetical protein, at 2,985,463 to 2,985,960 _RS33015 BPHYT_RS33020: BPHYT_RS33020 - hypothetical protein, at 2,985,964 to 2,986,740 _RS33020 Position (kb) 2985 2986Strain fitness (log2 ratio) -1 0 1at 2984.922 kb on - strand, within BPHYT_RS33010at 2984.978 kb on - strand, within BPHYT_RS33010at 2985.353 kb on - strandat 2985.422 kb on + strandat 2985.697 kb on + strand, within BPHYT_RS33015at 2986.236 kb on - strand, within BPHYT_RS33020at 2986.679 kb on + strandat 2986.680 kb on - strandat 2986.680 kb on - strandat 2986.884 kb on + strandat 2986.885 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
remove
2,984,922 - BPHYT_RS33010 0.15 +0.7
2,984,978 - BPHYT_RS33010 0.27 +0.6
2,985,353 - +0.5
2,985,422 + -0.3
2,985,697 + BPHYT_RS33015 0.47 +0.4
2,986,236 - BPHYT_RS33020 0.35 -0.2
2,986,679 + +0.6
2,986,680 - +0.1
2,986,680 - -0.8
2,986,884 + -1.0
2,986,885 - +0.3

Or see this region's nucleotide sequence